User:EvoProgrammer

Human Genome Project

• Developer Name: Dean Van Greunen
• Developer Code Name: EvoProgrammer
• project link: https://en.wikipedia.org/wiki/Human_Genome_Project
• license link: http://creativecommons.org/licenses/by-nc/4.0/

Python Source Code

def getCodonList():
	a = {}
	a['ATT'] = a['ATC'] = a['ATA'] = 'I'
	a['CTT'] = a['CTC'] = a['CTA'] = a['CTG'] = a['TTA'] = a['TTG'] = 'L'
	a['GTT'] = a['GTC'] = a['GTA'] = a['GTG'] = 'V'
	a['TTT'] = a['TTC'] = 'F'
	a['ATG'] = 'M'
	a['TGT'] = a['TGC'] = 'C'
	a['GCT'] = a['GCC'] = a['GCA'] = a['GCG'] = 'A'
	a['GGT'] = a['GGC'] = a['GGA'] = a['GGG'] = 'G'
	a['CCT'] = a['CCC'] = a['CCA'] = a['CCG'] = 'P'
	a['ACT'] = a['ACC'] = a['ACA'] = a['ACG'] = 'T'
	a['TCT'] = a['TCC'] = a['TCA'] = a['TCG'] = a['AGT'] = a['AGC'] = 'S'
	a['TAT'] = a['TAC'] = 'Y'
	a['TGG'] = 'W'
	a['CAA'] = a['CAG'] = 'Q'
	a['AAT'] = a['AAC'] = 'N'
	a['CAT'] = a['CAC'] = 'H'
	a['GAA'] = a['GAG'] = 'E'
	a['GAT'] = a['GAC'] = 'D'
	a['AAA'] = a['AAG'] = 'K'
	a['CGT'] = a['CGC'] = a['CGA'] = a['CGG'] = a['AGA'] = a['AGG'] = 'R'
	a['TAA'] = a['TAG'] = a['TGA'] = 'stop'
	return a
def getCodon(s):
	return str(getCodonList()[s])
def readDNA(s):
	if len(s) % 3 != 0:
		s = s[0:-(len(s)%3)]
	r = ""
	i = 0
	while i < len(s):
		r = r + getCodon(s[i:i+3])
		i += 3
	return r
	
#programe start
f = open('dna.txt','r+')
for line in f.readlines():
	print(readDNA(line))

File: dna.txt

ACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCCTGG
GGAGAAGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAAGTTGGTGGTGAGGCCCTGGGC
AGGCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATG
CTGTTATGGGCAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTGATGGCCTGGC
TCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGAT
CCTGAGAACTTCAGGCTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCA
CCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAATGCCCTGGCCCACAAGTATCA
CTAAGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCTTTGTTCCCTAAGTCCAACTACTAAACT
GGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAAACATTTATTTTCATTGC

Lasted Updated/Edit/Modified: EvoProgrammer (talk) 00:53, 21 May 2015 (UTC)