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List of Archaea genera

From Wikipedia, the free encyclopedia

This article lists the genera of the Archaea and also shows taxa of archaea that do not contain genera. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[2] unless otherwise noted.

Phylogeny

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For the GTDB phylogeny, National Center for Biotechnology Information (NCBI) taxonomy was initially used to decorate the genome tree via tax2tree. The 16S rRNA-based Greengenes taxonomy is used to supplement the taxonomy particularly in regions of the tree with no cultured representatives. List of Prokaryotic names with Standing in Nomenclature (LPSN) is used as the primary taxonomic authority for establishing naming priorities. Taxonomic ranks are normalised using Phylorank and the taxonomy manually curated to remove polyphyletic groups.[3][4][5][6][7]

Cladogram was taken from the GTDB release 10-RS226 (16 April 2025).[8][9][10]

Archaea

Phylum Microcaldota

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Class Microcaldia

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Order Microcaldales

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  • Family Microcaldaceae Sakai et al. 2023

Phylum "Altarchaeota"

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Class "Altarchaeia"

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Order "Altarchaeales"

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  • Family "Altarchaeaceae" corrig. Probst et al. 2014

Phylum "Iainarchaeota"

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Class "Iainarchaeia"

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Order "Forterreales"

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  • Family "Forterreaceae" Pallen, Rodriguez-R & Alikhan 2022 [CSSED10-239]
    • "Candidatus Forterrea" Probst & Banfield 2017

Order "Iainarchaeales"

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  • Family "Iainarchaeaceae" Rinke et al. 2020

Phylum "Micrarchaeota"

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Phylogeny of "Micrarchaeota"[8][9][10]
"Norongarragalinales"

"Ca. Norongarragalina"

"Micrarchaeales"
"Micrarchaeaceae"
"Anstonellales"
"Anstonellaceae"

"Ca. Anstonella"

"Bilamarchaeaceae"

"Ca. Bilamarchaeum"

"Gugararchaeales"

"Ca. Gugararchaeum"

"Burarchaeales"

"Ca. Burarchaeum"

"Fermentimicrarchaeales"

"Ca. Fermentimicrarchaeum"

Class "Micrarchaeia"

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Order "Norongarragalinales"

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  • Family "Norongarragalinaceae" Vázquez-Campos et al. 2021

Order "Micrarchaeales"

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  • Family "Micrarchaeaceae" Vázquez-Campos et al. 2021

Order "Anstonellales"

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  • Family "Anstonellaceae" Vázquez-Campos et al. 2021
    • "Candidatus Anstonella" Vázquez-Campos et al. 2021
  • Family "Bilamarchaeaceae" Vázquez-Campos et al. 2021

Order "Gugararchaeales"

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  • Family "Gugararchaeaceae" Vázquez-Campos et al. 2021

Order "Burarchaeales"

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  • Family "Burarchaeaceae" Vázquez-Campos et al. 2021

Order "Fermentimicrarchaeales"

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  • Family "Fermentimicrarchaeaceae" Kadnikov et al. 2020 (Sv326)

Phylum "Undinarchaeota"

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Class "Undinarchaeia"

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Order "Undinarchaeales"

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  • Family "Naiadarchaeaceae" Dombrowski et al. 2020
  • Family "Undinarchaeaceae" Dombrowski et al. 2020

Phylum "Huberarchaeaota"

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Class "Huberarchaeia"

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Order "Huberarchaeales"

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  • Family "Huberarchaeaceae" Rinke et al. 2020

Phylum "Aenigmatarchaeota"

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Class "Aenigmatarchaeia"

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Order "Aenigmatarchaeales"

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  • Family "Aenigmatarchaeaceae" corrig. Rinke et al. 2020

Phylum "Nanohalarchaeota"

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Class "Nanohalarchaeia"

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Order "Nanohalarchaeales"

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  • Family "Nanohalarchaeaceae"

Order "Nanohydrothermales"

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  • Family "Nanohydrothermaceae" Xie et al. 2022

Order "Nucleotidisoterales"

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  • Family "Nanosalenecaceae" Xie et al. 2022
  • Family "Nucleotidisoteraceae" Xie et al. 2022
  • Family "Nucleotidivindicaceae" Xie et al. 2022

Class "Nanohalobiia"

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Order "Nanohalobiales"

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Phylogeny of "Nanohalobiales"[8][9][10]
"Nanohalalkaliarchaeaceae"

"Candidatus Nanohalalkaliarchaeum"

"Nanoanaerosalinaceae"

"Candidatus Asbonarchaeum"

"Candidatus Nanoanaerosalina"

"Nanohalobiaceae"

"Candidatus Nanosalinicola"

"Candidatus Nanohalococcus"

"Candidatus Nanohalobium"

"Candidatus Nanohalovita"

"Candidatus Nanosalina"

Phylum Nanobdellota

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Phylogeny of Nanobdellota[8][9][10]
Nanobdellales
"Nanoarchaeaceae"

"Nanoarchaeum"

Nanobdellaceae
"Tiddalikarchaeales"
"Tiddalikarchaeaceae"

"Ca. Tiddalikarchaeum"

"Jingweiarchaeales"
"Jingweiarchaeaceae"

"Ca. Jingweiarchaeum"

"JAPDLS01"
"Haiyanarchaeaceae"

"Ca. Haiyanarchaeum"

"Parvarchaeales"
"Parvarchaeaceae"

Class Nanobdellia

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Order "Pacearchaeales"

Order "Woesearchaeales"

Order Nanobdellales

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  • Family "Nanoarchaeaceae" Huber et al. 2011
  • Family Nanobdellaceae Kato et al. 2022 ["Nanopusillaceae" Huber et al. 2011]

Order "Tiddalikarchaeales"

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  • Family "Tiddalikarchaeaceae" Vázquez-Campos et al. 2021

Order "Jingweiarchaeales"

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  • Family "Jingweiarchaeaceae" Rao et al. 2023

Order JAPDLS01

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  • Family "Haiyanarchaeaceae" Rao et al. 2023
    • "Candidatus Haiyanarchaeum" Rao et al. 2023 ["Ca. Tinosarcha" Pallen, Rodriguez-R & Alikhan 2022]

Order "Parvarchaeales"

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Phylum Promethearchaeota

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Taxonomy of this group is based on LPSN,[1] and also these works:[11][12][13][14]

Phylogeny of "Asgardarchaeota"[8][9][10]
"Asgardarchaeia"

"Asgardarchaeales"

"Atabeyarchaeia"

"Atabeyarchaeales"

"Sifarchaeia"
"Wukongarchaeia"

"Wukongarchaeales"

"Njordarchaeia"

"Njordarchaeales"

"Heimdallarchaeia"
"Odinarchaeia"

"Odinarchaeales"

"Jordiarchaeia"

"Jordiarchaeales"

Promethearchaeota incertae sedis

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  • ?"Friggarchaeota" Caceres 2019
  • ?"Gefionarchaeota" Caceres 2019
  • ?"Idunnarchaeota" Caceres 2019
  • ?"Sleipnirarchaeota" Kioukis et al. 2025
  • ?"Candidatus Balderarchaeum" Xie et al. 2022
  • ?"Candidatus Sukunaarchaeum" Harada et al. 2025[15]
  • ?"Candidatus Tyrarchaeum" Xie et al. 2022

Class "Asgardarchaeia"

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Order "Asgardarchaeales"

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  • Family "Asgardarchaeaceae" Eme et al. 2023 ex Tamarit et al. 2024

Class "Atabeyarchaeia"

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Order "Atabeyarchaeales"

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  • Family "Atabeyarchaeaceae" Valentin-Alvaradoet al. 2024

Class "Sifarchaeia"

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Order "Sifarchaeales"

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  • Family "Sifarchaeaceae" Sun et al. 2021
    • "Candidatus Sifarchaeum" corrig. Farag, Zhao & Biddle 2020

Order "Borrarchaeales"

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  • Family "Borrarchaeaceae" Liu et al. 2021

Class "Wukongarchaeia"

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Order "Wukongarchaeales"

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  • Family "Wukongarchaeaceae" Liu et al. 2021

Class "Njordarchaeia"

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Order "Njordarchaeales"

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  • Family "Panguiarchaeaceae" Qu et al. 2023
  • Family "Njordarchaeaceae" Xie et al. 2022

Class "Heimdallarchaeia"

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Order "Wenzhongarchaeales"

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Order "Hodarchaeales"

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  • Family "Hodarchaeaceae" Liu et al. 2021
  • Family "Margulisarchaeaceae" Imachi et al. 2025

Order "Gerdarchaeales"

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Order "Heimdallarchaeales"

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  • Family "Kariarchaeaceae" Liu et al. 2021
  • Family "Heimdallarchaeaceae" Wu et al. 2022

Class "Odinarchaeia"

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Order "Odinarchaeales"

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  • Family "Odinarchaeaceae" Tamarit et al. 2022

Order "Yangjianarchaeales"

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Class "Jordarchaeia"

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Order "Jordarchaeales"

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  • Family "Freyrarchaeaceae" Xie et al. 2022
  • Family "Jordarchaeaceae" Sun et al. 2021
    • "Candidatus Jordarchaeum" Sun et al. 2021 ["Ca. Freyarchaeum" (sic) Valentin-Alvarado et al. 2024]

Class "Baldrarchaeia"

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Order "Baldrarchaeales"

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  • Family "Baldrarchaeaceae" corrig. Liu et al. 2021

Class "Thorarchaeia"

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Order "Thorarchaeales"

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  • Family "Thorarchaeaceae" (MBG-B)

Class "Hermodarchaeia"

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Order "Hermodarchaeales"

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  • Family "Hermodarchaeaceae" corrig. Liu et al. 2021

Class Promethearchaeia

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Order "Helarchaeales"

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Order Promethearchaeales

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Phylogeny of "Promethearchaeales"[8][9][10]
"Sigynarchaeaceae"

"Ca. Sigynarchaeum"

Promethearchaeaceae

Phylum "Korarchaeota"

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Class "Korarchaeia"

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Order "Korarchaeales"

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Phylum Thermoproteota

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Phylogeny of Thermoproteota[8][9][10]

Thermoproteota Incertae sedis

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"Brockiarchaeota"

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Class "Bathyarchaeia"

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Order "Bifangarchaeales"

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  • Family "Bifangicolaceae" Hou et al. 2023
    • ?"Candidatus Bifangicola" Hou et al. 2023 [3300025546_26]
  • Family "Bifangarchaeaceae" Hou et al. 2023
    • "Candidatus Bifangarchaeum" corrig. Hou et al. 2023 [B24: DTBU01 sp011374155]
  • Family "Bifangistellaceae" Hou et al. 2023
    • "Candidatus Bifangistella" Hou et al. 2023 [DRYS01: DRYS01 sp011367275]

Order "Xuanwuarculales"

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  • Family "Mazuisomaceae" Hou et al. 2023
  • Family "Mazuicellaceae" Hou et al. 2023
  • Family "Mazuousiaecae" Hou et al. 2023
  • Family "Xuanwuarculaceae" Hou et al. 2023
    • "Candidatus Xuanwuarcula" Hou et al. 2023 [RBG-16-48-13 sp001775995]

Order "Hecatellales"

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Phylogeny of "Hecatellales"[8][9][10]
"Hecatellaceae"

"Ca. Hecatella"

"Ca. Jinwuarcula"

"Ca. Jinwuicola"

"Ca. Jinwuimorpha"

  • Family "Hecatellaceae" Rinke et al. 2020

Order "Houtuarculales"

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Phylogeny of "Houtuarculales"[8][9][10]
"Crenohoutuithermaceae"

"Ca. Crenohoutuithermus"

"Fontihoutuithermaceae"

"Ca. Fontihoutuithermus"

"Aphrohoutuibellaceae"
"Houtuousiaceae"

"Ca. Houtuousia"

"Houtuarculaceae"

"Ca. Houtuarcula"

  • Family "Houtuithermaceae" Hou et al. 2023
  • Family "Marihoutuimonadaceae" Hou et al. 2023
  • Family "Crenohoutuithermaceae" Hou et al. 2023
  • Family "Fontihoutuithermaceae" Hou et al. 2023
  • Family "Aphrohoutuibellaceae" Hou et al. 2023
  • Family "Houtuousiaceae" Hou et al. 2023
    • "Candidatus Houtuousia" Hou et al. 2023 [40CM-2-53-6]
  • Family "Houtuarculaceae" Hou et al. 2023

Order "Wuzhiqiibiales"

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Phylogeny of "Wuzhiqiibiales"[8][9][10]
"Wuzhiqiimorphaceae"

"Ca. Wuzhiqiimorpha"

"Wuzhiqiimonadaceae"

"Ca. Wuzhiqiimonas"

"Wuzhiqiibiaceae"

"Ca. Wuzhiqiibium"

  • Family "Wuzhiqiithermaceae" Hou et al. 2023
  • Family "Wuzhiqiitorraceae" Hou et al. 2023
  • Family "Wuzhiqiimorphaceae" Hou et al. 2023
    • "Candidatus Wuzhiqiimorpha" Hou et al. 2023 [PIYN01: PIYN01 sp003601775]
  • Family "Wuzhiqiimonadaceae" Hou et al. 2023
  • Family "Wuzhiqiibiaceae" Hou et al. 2023

Order "Zhuquarculales"

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  • Family "Zhuquarculaceae" Hou et al. 2023
  • Family "Zhuquomorphaceae" Hou et al. 2023

Order "Bathyarchaeales"

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Phylogeny of "Bathyarchaeales"[8][9][10]
"Pontizhurongicolaceae"

"Ca. Pontizhurongicola"

"Hanbarchaeaceae"
"Marizhurongicellaceae"
"Hanbopyraceae"

"Ca. Hanbopyrus"

"Jingweiiplasmataceae"

"Ca. Jingweiiplasma"

"Bathyarchaeaceae"
"Bathycorpusculaceae"
  • Family "Actozhurongousiaceae" Hou et al. 2023
  • Family "Yuguousiaceae" Hou et al. 2023
  • Family "Pontizhurongicolaceae" Hou et al. 2023
  • Family "Hanbarchaeaceae" Hou et al. 2023
    • "Candidatus Fufeiimorpha" Hou et al. 2023 [PIYB01]
    • "Candidatus Hanbarchaeum" Hou et al. 2023 [DTEX01]
    • "Candidatus [[Zhurongicella]" Hou et al. 2023 [B63]
  • Family "Marizhurongicellaceae" Hou et al. 2023 [B26-1]
  • Family "Hanbopyraceae" Hou et al. 2023
    • "Candidatus Hanbopyrus" Hou et al. 2023 [WUQV01 sp009889585]
  • Family "Jingweiiplasmataceae" Hou et al. 2023
  • Family "Bathyarchaeaceae" Khomyakova et al. 2023
  • Family "Bathycorpusculaceae" Loh & Brune 2023 [UBA233]

Class Nitrososphaeria_A

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Order "Caldarchaeales"

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Phylogeny of "Caldarchaeales"[8][9][10]
"Calditenuaceae"

"Ca. Calditenuis"

"Caldarchaeaceae"
"Wolframiiraptoraceae"
  • Family "Calditenuaceae" Balbay et al. 2023
  • Family "Caldarchaeaceae" Rinke et al. 2020
    • "Candidatus Caldarchaeum" corrig. Nunoura et al. 2011
    • "Candidatus Pelearchaeum" Balbay et al. 2023 ["Ca. Cadrafarcha" Pallen, Rodriguez-R & Alikhan 2022]
  • Family "Wolframiiraptoraceae" Buessecker et al. 2022

Class Nitrososphaeria

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Nitrososphaeria incertae sedis

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Order "Geothermarchaeales"

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Order PSMU01

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Order "Conexivisphaerales"

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  • Family "Conexivisphaeraceae" Kato et al. 2021 (THSC Group)

Order Nitrososphaerales

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Phylogeny of Nitrososphaerales[8][9][10]

Class "Methanomethylicia"

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  • Order "Methanohydrogenicales"
    • Family "Methanohydrogenicaceae" Berghuis et al. 2019
  • Order "Methanomethylarchaeales"
    • Family "Methanomethylarchaeceae" corrig. Hua et al. 2019
  • Order "Methanomethylovorales"
    • Family "Methanomethylovoraceae" Hua et al. 2019

Order "Nezhaarchaeales"

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Order "Culexarchaeles"

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  • Family "Culexarchaeaceae" Kohtz et al. 2022 ["Methanomediaceae" Berghuis et al. 2019]
    • "Candidatus Culexarchaeum" Kohtz et al. 2022 ["Ca. Methanomedium" Berghuis et al. 2019]
  • Family "Culexmicrobiaceae" Kohtz et al. 2022

Order "Methanosuratincolales"

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Class Thermoproteia

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Order "Gearchaeales"

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  • Family "Gearchaeaceae" corrig.

Order Thermofilales

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Order Thermoproteales

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Phylogeny of Thermoproteales[8][9][10]
Thermocladiaceae
Thermoproteaceae

Class "Sulfolobia"

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Order "Tardisphaerales"

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Order Sulfolobales

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Phylogeny of Sulfolobales[8][9][10]

Phylum "Hadarchaeota"

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Class "Persephonarchaeia"

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Class "Hadarchaeia"

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Order "Hadarchaeales"

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  • Family "Cerberiarchaeaceae" Benito Merino et al. 2024
  • Family "Hadarchaeaceae" Chuvochina et al. 2019 ex Chuvochina et al. 2023

Phylum Methanobacteriota_B

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Class "Theionarchaeia"

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Class Thermococci

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Phylogeny of Thermococci[8][9][10]

Order "Methanofastidiosales"

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  • Family "Methanofastidiosaceae" Rinke et al. 2020

Order Thermococcales

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Phylum "Hydrothermarchaeota"

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Class "Hydrothermarchaeia"

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Order "Hydrothermarchaeales"

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  • Family BMS3B
  • Family "Hydrothermarchaeaceae" Chuvochina et al. 2019

Phylum Methanobacteriota

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Phylogeny of Methanobacteriota[8][9][10]

Class "Methanococcia"

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Order Methanococcales

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Class Methanopyria

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Order Methanopyrales

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Class Methanobacteriia

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Order Methanobacteriales

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Phylum Thermoplasmatota

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Phylogeny of Thermoplasmatota[8][9][10]

Class "Izemarchaea"

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Order "Thermoprofundales"

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  • (MBG-D, E2)

Class "Poseidoniia"

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Order MGIII

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Order "Poseidoniales"

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  • Family "Poseidoniaceae" Rinke et al. 2019
  • Family "Thalassarchaeaceae" Rinke et al. 2019

Class "Penumbrarchaeia"

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Order "Penumbrarchaeales"

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  • Family "Penumbrarchaeaceae" Maeke et al. 2025
    • "Candidatus Penumbrarchaeum" Maeke et al. 2025 [EX4484-36: EX4484-36: EX4484-6: GCA_965234725.1]

Class Thermoplasmata

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Order "Angelarchaeales"

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Order "Lunaplasmatales"

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  • Family "Lunaplasmataceae" corrig. Zinke et al. 2021

Order "Proteinoplasmatales"

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  • (SG8-5)

Order "Yaplasmatales"

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  • (RBG-16-68-12) [incl. "Detorarchales" Pallen & Alikhan 2021; "Limitiplasmatales" corrig. Zheng et al. 2022]

Order "Gimiplasmatales"

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  • Family "Gimiplasmataceae" Hu et al. 2020

Order "Sysuiplasmatales"

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  • Family "Sysuiplasmataceae" Yuan et al. 2021

Order Methanomassiliicoccales

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Phylogeny of Methanomassiliicoccales[8][9][10]

Order "Halarchaeoplasmatales"

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Phylogeny of "Halarchaeoplasmatales"[8][9][10]

"Candidatus Haladaptiplasma"

"Candidatus Halarchaeoplasma"

"Candidatus Natronoplasma"

"Candidatus Saliniplasma"

Order "Lutacidiplasmatales"

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  • Family "Lutacidiplasmataceae" Sheridan et al. 2022

Order "Aciduliprofundales"

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  • Family "Aciduliprofundaceae" Rinke et al. 2020

Order Thermoplasmatales

[edit]
Phylogeny of Thermoplasmatales[8][9][10]

Phylum Halobacteriota

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Phylogeny of Halobacteriota[8][9][10]

Halobacteriota incertae sedis

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Class "Methanonatronarchaeia"

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Order "Methanonatronarchaeales"

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Class "Methanoliparia"

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Order "Methanoliparales"

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Class "Archaeoglobia"

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Phylogeny of "Archaeoglobia"[8][9][10]
"Mnemosynellales"
"Mnemosynellaceae"

"Ca. Mnemosynella"

Archaeoglobales

Order "Mnemosynellales"

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  • Family "Mnemosynellaceae" Adam et al. 2022

Order Archaeoglobales

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Class "Syntropharchaeia"

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Order "Aerarchaeales"

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  • Family YL-1
  • Family "Aerarchaeaceae" Leu et al. 2025 [CG-2]
    • "Candidatus Aerarchaeum" Leu et al. 2025 (GG-2)
    • "Candidatus Aerovita" Leu et al. 2025 (CM-1, CG-1, MW-1)

Order "Syntropharchaeales"

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  • Family "Syntropharchaeaceae" (ANME-2 cluster)

Order "Alkanophagales"

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  • Family "Methanophagaceae" Chadwick et al. 2022
  • Family ?"Veteromethanophagaceae" Vulcano et al. 2022
  • Family "Alkanophagaceae" [B39-G2]
  • Family "Methanospiraraceae" Laso-Pérez et al. 2022

Class Methanocellia

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Order Methanocellales

[edit]
Phylogeny of Methanocellales[8][9][10]
Methanocellaceae

Class Methanosarcinia

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Order Methanotrichales

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Order Methanosarcinales_A

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Family Methermicoccaceae Cheng et al. 2007

Order Methanosarcinales

[edit]
Phylogeny of Methanosarcinales[8][9][10]

Class "Methanomicrobia"

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Order Methanomicrobiales

[edit]
Phylogeny of Methanomicrobiales[8][9][10]

Class "Hikarchaeia"

[edit]

Order "Hikarchaeales"

[edit]
  • Family "Hikarchaeaceae" Martijn et al. 2020 (MG-IV)

Class "Ordosarchaeia"

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Order "Ordosarchaeales"

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  • Family "Ordosarchaeaceae" Zhao et al. 2024

Class Halobacteria

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Order Halorutilales

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  • Family Halorutilaceae Durán-Viseras et al. 2023

Order Halobacteriales

[edit]
Phylogeny of Halobacteriales[8][9][10]
Phylogeny of Natrialbaceae[8][9][10]
Phylogeny of Haloferacaceae[8][9][10]

See also

[edit]

References

[edit]
  1. ^ a b Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332. ISSN 1466-5034. PMC 7723251. PMID 32701423.
  2. ^ Schoch, Conrad L; Ciufo, Stacy; Domrachev, Mikhail; Hotton, Carol L; Kannan, Sivakumar; Khovanskaya, Rogneda; Leipe, Detlef; Mcveigh, Richard; O’Neill, Kathleen; Robbertse, Barbara; Sharma, Shobha; Soussov, Vladimir; Sullivan, John P; Sun, Lu; Turner, Seán (2020-01-01). "NCBI Taxonomy: a comprehensive update on curation, resources and tools". Database. 2020 baaa062. doi:10.1093/database/baaa062. ISSN 1758-0463. PMC 7408187. PMID 32761142.
  3. ^ Parks, DH; Chuvochina, M; Waite, DW; Rinke, C; Skarshewski, A; Chaumeil, PA; Hugenholtz, P (November 2018). "A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life". Nature Biotechnology. 36 (10): 996–1004. bioRxiv 10.1101/256800. doi:10.1038/nbt.4229. PMID 30148503. S2CID 52093100.
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