Jump to content

User talk:CodeSwitch/sandbox

Page contents not supported in other languages.
From Wikipedia, the free encyclopedia
< User talk:CodeSwitch
This is an old revision of this page, as edited by CodeSwitch (talk | contribs) at 19:06, 16 September 2017 (Additional content suggestions added.). The present address (URL) is a permanent link to this revision, which may differ significantly from the current revision.

Bacterial Circadian Rhythms

This article needs a section after the lead that better explains what circadian rhythms are and their general role in organisms[1][2]. A section discussing why bacterial circadian rhythms need to synchronize with the environment should be created and updated with current understanding[3][4].

The section “Relationship to Cell Division” should discuss how bacterial circadian rhythms gate-keep for cell division[5][6]. The section “Global regulation… chromosome topology” should explain the choice of using cyanobacteria for elucidating circadian rhythms instead of eukaryotes[7][8] and elaborate on chromosomal compaction due to circadian rhythms[9]. The “molecular mechanism” section regarding KaiABC proteins needs updating as it doesn’t discuss the reciprocal interplay between the Kai proteins[10][11][12][13] and doesn’t explain the post-translational regulation mechanism adequately[14]. Other significant proteins in bacterial circadian rhythms such as SasA[15][16], CikA[17][18] and RpaA[19][20] should also be discussed. New research such as the successful transplantation of KaiABC proteins in prokaryotes other than cyanobacteria[21] and how diurnal variation of gut bacteria influence mouse circadian rhythms[22][23] should be added.

CodeSwitch (talk) 19:06, 16 September 2017 (UTC)[reply]

  1. ^ Harmer, Stacey L.; Panda, Satchidananda; Kay, Steve A. (November 2001). "Molecular Bases of Circadian Rhythms". Annual Review of Cell and Developmental Biology. 17 (1): 215–253. doi:10.1146/annurev.cellbio.17.1.215.
  2. ^ Ouyang, Y.; Andersson, C. R.; Kondo, T.; Golden, S. S.; Johnson, C. H. (21 July 1998). "Resonating circadian clocks enhance fitness in cyanobacteria". Proceedings of the National Academy of Sciences. 95 (15): 8660–8664. doi:10.1073/pnas.95.15.8660.
  3. ^ Ivleva, Natalia B; Bramlett, Matthew R; Lindahl, Paul A; Golden, Susan S (10 March 2005). "LdpA: a component of the circadian clock senses redox state of the cell". The EMBO Journal. 24 (6): 1202–1210. doi:10.1038/sj.emboj.7600606.
  4. ^ Schmitz, O. (4 August 2000). "CikA, a Bacteriophytochrome That Resets the Cyanobacterial Circadian Clock". Science. 289 (5480): 765–768. doi:10.1126/science.289.5480.765. {{cite journal}}: |access-date= requires |url= (help)
  5. ^ Mori, T.; Binder, B.; Johnson, C. H. (17 September 1996). "Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 hours". Proceedings of the National Academy of Sciences. 93 (19): 10183–10188. ISSN 0027-8424. Retrieved 16 September 2017.
  6. ^ Dong, Guogang; Yang, Qiong; Wang, Qiang; Kim, Yong-Ick; Wood, Thammajun L.; Osteryoung, Katherine W.; van Oudenaarden, Alexander; Golden, Susan S. (February 2010). "Elevated ATPase Activity of KaiC Applies a Circadian Checkpoint on Cell Division in Synechococcus elongatus". Cell. 140 (4): 529–539. doi:10.1016/j.cell.2009.12.042.
  7. ^ Cohen, Susan E.; Golden, Susan S. (2 September 2015). "Circadian Rhythms in Cyanobacteria". Microbiology and Molecular Biology Reviews. 79 (4): 373–385. doi:10.1128/MMBR.00036-15.
  8. ^ Kondo, T; Tsinoremas, N.; Golden, S.; Johnson, C.; Kutsuna, S; Ishiura, M (18 November 1994). "Circadian clock mutants of cyanobacteria". Science. 266 (5188): 1233–1236. doi:10.1126/science.7973706.
  9. ^ Smith, R. M.; Williams, S. B. (17 May 2006). "Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus". Proceedings of the National Academy of Sciences. 103 (22): 8564–8569. doi:10.1073/pnas.0508696103.
  10. ^ Tseng, Roger; Goularte, Nicolette F.; Chavan, Archana; Luu, Jansen; Cohen, Susan E.; Chang, Yong-Gang; Heisler, Joel; Li, Sheng; Michael, Alicia K.; Tripathi, Sarvind; Golden, Susan S.; LiWang, Andy; Partch, Carrie L. (17 March 2017). "Structural basis of the day-night transition in a bacterial circadian clock". Science. 355 (6330): 1174–1180. doi:10.1126/science.aag2516.
  11. ^ Kim, Y.-I.; Dong, G.; Carruthers, C. W.; Golden, S. S.; LiWang, A. (26 August 2008). "The day/night switch in KaiC, a central oscillator component of the circadian clock of cyanobacteria". Proceedings of the National Academy of Sciences. 105 (35): 12825–12830. doi:10.1073/pnas.0800526105.
  12. ^ Chang, Y.-G.; Cohen, S. E.; Phong, C.; Myers, W. K.; Kim, Y.-I.; Tseng, R.; Lin, J.; Zhang, L.; Boyd, J. S.; Lee, Y.; Kang, S.; Lee, D.; Li, S.; Britt, R. D.; Rust, M. J.; Golden, S. S.; LiWang, A. (25 June 2015). "A protein fold switch joins the circadian oscillator to clock output in cyanobacteria". Science. 349 (6245): 324–328. doi:10.1126/science.1260031.
  13. ^ Chang, Y.-G.; Cohen, S. E.; Phong, C.; Myers, W. K.; Kim, Y.-I.; Tseng, R.; Lin, J.; Zhang, L.; Boyd, J. S.; Lee, Y.; Kang, S.; Lee, D.; Li, S.; Britt, R. D.; Rust, M. J.; Golden, S. S.; LiWang, A. (25 June 2015). "A protein fold switch joins the circadian oscillator to clock output in cyanobacteria". Science. 349 (6245): 324–328. doi:10.1126/science.1260031.
  14. ^ Tomita, J. (14 January 2005). "No Transcription-Translation Feedback in Circadian Rhythm of KaiC Phosphorylation". Science. 307 (5707): 251–254. doi:10.1126/science.1102540.
  15. ^ Tseng, Roger; Chang, Yong-Gang; Bravo, Ian; Latham, Robert; Chaudhary, Abdullah; Kuo, Nai-Wei; LiWang, Andy (January 2014). "Cooperative KaiA–KaiB–KaiC Interactions Affect KaiB/SasA Competition in the Circadian Clock of Cyanobacteria". Journal of Molecular Biology. 426 (2): 389–402. doi:10.1016/j.jmb.2013.09.040.
  16. ^ Valencia S., J.; Bitou, Kyouhei; Ishii, Kentaro; Murakami, Reiko; Morishita, Megumi; Onai, Kiyoshi; Furukawa, Yukio; Imada, Katsumi; Namba, Keiichi; Ishiura, Masahiro (May 2012). "Phase-dependent generation and transmission of time information by the KaiABC circadian clock oscillator through SasA-KaiC interaction in cyanobacteria". Genes to Cells. 17 (5): 398–419. doi:10.1111/j.1365-2443.2012.01597.x.
  17. ^ Mutsuda, Michinori; Michel, Klaus-Peter; Zhang, Xiaofan; Montgomery, Beronda L.; Golden, Susan S. (23 May 2003). "Biochemical Properties of CikA, an Unusual Phytochrome-like Histidine Protein Kinase That Resets the Circadian Clock in PCC 7942". Journal of Biological Chemistry. 278 (21): 19102–19110. doi:10.1074/jbc.M213255200. {{cite journal}}: |access-date= requires |url= (help)CS1 maint: unflagged free DOI (link)
  18. ^ Ivleva, N. B.; Gao, T.; LiWang, A. C.; Golden, S. S. (6 November 2006). "Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock". Proceedings of the National Academy of Sciences. 103 (46): 17468–17473. doi:10.1073/pnas.0606639103.
  19. ^ Gutu, Andrian; O’Shea, Erin K. (April 2013). "Two Antagonistic Clock-Regulated Histidine Kinases Time the Activation of Circadian Gene Expression". Molecular Cell. 50 (2): 288–294. doi:10.1016/j.molcel.2013.02.022. {{cite journal}}: no-break space character in |first2= at position 5 (help)
  20. ^ Takai, N.; Nakajima, M.; Oyama, T.; Kito, R.; Sugita, C.; Sugita, M.; Kondo, T.; Iwasaki, H. (1 August 2006). "A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria". Proceedings of the National Academy of Sciences. 103 (32): 12109–12114. doi:10.1073/pnas.0602955103.
  21. ^ Chen, A. H.; Lubkowicz, D.; Yeong, V.; Chang, R. L.; Silver, P. A. (12 June 2015). "Transplantability of a circadian clock to a noncircadian organism". Science Advances. 1 (5): e1500358 – e1500358. doi:10.1126/sciadv.1500358.
  22. ^ Liang, Xue; FitzGerald, Garret A. (September 2017). "Timing the Microbes: The Circadian Rhythm of the Gut Microbiome". Journal of Biological Rhythms. doi:10.1177/0748730417729066.
  23. ^ Thaiss, Christoph A.; Zeevi, David; Levy, Maayan; Zilberman-Schapira, Gili; Suez, Jotham; Tengeler, Anouk C.; Abramson, Lior; Katz, Meirav N.; Korem, Tal; Zmora, Niv; Kuperman, Yael; Biton, Inbal; Gilad, Shlomit; Harmelin, Alon; Shapiro, Hagit; Halpern, Zamir; Segal, Eran; Elinav, Eran (October 2014). "Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis". Cell. 159 (3): 514–529. doi:10.1016/j.cell.2014.09.048. {{cite journal}}: no-break space character in |first1= at position 10 (help); no-break space character in |first6= at position 6 (help); no-break space character in |first8= at position 7 (help)
Retrieved from "https://en.wikipedia.org/w/index.php?title=User_talk:CodeSwitch/sandbox&oldid=800952495"