Jump to content

BioJS

Add links
From Wikipedia, the free encyclopedia
This is an old revision of this page, as edited by BigrTex (talk | contribs) at 00:24, 30 November 2015 (Fixing duplicate reference name error: "KalderimisStepan2014" defined for three different articles, but never reused.). The present address (URL) is a permanent link to this revision, which may differ significantly from the current revision.
BioJS
Initial release2012
Repository
Written inJavaScript
Operating systemAny
PlatformCross-platform
TypeBioinformatics
LicenseApache 2
Websitebiojs.net

BioJS is an open source project for bioinformatics data on the web.[1] Its goal is to develop an open-source library of JavaScript components to visualise biological data.[2] BioJS develops and maintains small building blocks (components) which can be reused by others. For a discovery of available components, BioJS maintains a registry.

Selected list of published components

  • DAG Viewer[3]
  • DNA Content Viewer[4]
  • FeatureViewer[5]
  • HeatMapViewer[6]
  • Intermine analysis[7]
  • Intermine endpoints[8]
  • KEGGViewer[9]
  • PPI-Interactions[10]
  • PsicquicGraph[11]
  • Sequence[12]
  • wigExplorer[13]
  • treeWidget[14]

Institutions using BioJS

See also

References

  1. ^ Corpas, Manuel; Jimenez, Rafael; Carbon, Seth J; García, Alex; Garcia, Leyla; Goldberg, Tatyana; Gomez, John; Kalderimis, Alexis; Lewis, Suzanna E; Mulvany, Ian; Pawlik, Aleksandra; Rowland, Francis; Salazar, Gustavo; Schreiber, Fabian; Sillitoe, Ian; Spooner, William H; Thanki, Anil; Villaveces, José M; Yachdav, Guy; Hermjakob, Henning (2014). "BioJS: an open source standard for biological visualisation – its status in 2014". F1000Research. doi:10.12688/f1000research.3-55.v1. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  2. ^ "BioJS Vision and Mission". BioJS. Retrieved 29 August 2014.
  3. ^ Kalderimis, Alexis; Stepan, Radek; Sullivan, Julie; Lyne, Rachel; Lyne, Michael; Micklem, Gos (2014). "BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs". F1000Research. doi:10.12688/f1000research.3-51.v1. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  4. ^ Thanki, Anil S.; Caim, Shabhonam; Corpas, Manuel; Davey, Robert P. (2014). "DNAContentViewer a BioJS component to visualise GC/AT Content". F1000Research. doi:10.12688/f1000research.3-54.v1. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  5. ^ Garcia, Leyla; Yachdav, Guy; Martin, Maria-Jesus (2014). "FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences". F1000Research. doi:10.12688/f1000research.3-47.v2. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  6. ^ Yachdav, Guy; Hecht, Maximilian; Pasmanik-Chor, Metsada; Yeheskel, Adva; Rost, Burkhard (2014). "HeatMapViewer: interactive display of 2D data in biology". F1000Research. doi:10.12688/f1000research.3-48.v1. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  7. ^ Kalderimis, Alexis; Stepan, Radek; Sullivan, Julie; Lyne, Rachel; Lyne, Michael; Micklem, Gos (2014). "BioJS InterMine List Analysis: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints". F1000Research. doi:10.12688/f1000research.3-45.v1. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  8. ^ Kalderimis, Alexis; Stepan, Radek; Sullivan, Julie; Lyne, Rachel; Lyne, Michael; Micklem, Gos (2014). "BioJS InterMineTable Component: A BioJS component for displaying data from InterMine compatible webservice endpoints". F1000Research. doi:10.12688/f1000research.3-46.v1. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  9. ^ Villaveces, Jose M.; Jimenez, Rafael C.; Habermann, Bianca H. (2014). "KEGGViewer, a BioJS component to visualize KEGG Pathways". F1000Research. doi:10.12688/f1000research.3-43.v1. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  10. ^ Salazar, Gustavo A.; Meintjes, Ayton; Mulder, Nicola (2014). "PPI layouts: BioJS components for the display of Protein-Protein Interactions". F1000Research. doi:10.12688/f1000research.3-50.v1. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  11. ^ Villaveces, Jose M.; Jimenez, Rafael C.; Habermann, Bianca H. (2014). "PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers". F1000Research. doi:10.12688/f1000research.3-44.v1. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  12. ^ Gomez, John; Jimenez, Rafael (2014). "Sequence, a BioJS component for visualising sequences". F1000Research. doi:10.12688/f1000research.3-52.v1. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  13. ^ Thanki, Anil S.; Jimenez, Rafael C.; Kaithakottil, Gemy G.; Corpas, Manuel; Davey, Robert P. (2014). "wigExplorer, a BioJS component to visualise wig data". F1000Research. doi:10.12688/f1000research.3-53.v2. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  14. ^ Schreiber, Fabian (2014). "treeWidget: a BioJS component to visualise phylogenetic trees". F1000Research. doi:10.12688/f1000research.3-49.v1. ISSN 2046-1402.{{cite journal}}: CS1 maint: unflagged free DOI (link)
Retrieved from "https://en.wikipedia.org/w/index.php?title=BioJS&oldid=693035003"