RNA Modification Base
 | |
| Content | |
|---|---|
| Description | microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. |
| Contact | |
| Research center | Sun Yat-sen University |
| Laboratory | Key Laboratory of Gene Engineering of the Ministry of Education |
| Authors | Jian-Hua Yang |
| Primary citation | Yang & al. (2011)[1] |
| Release date | 2010 |
| Access | |
| Website | http://starbase.sysu.edu.cn/ |
RMBase (RNA Modification Base) [2] is designed for decoding the landscape of RNA modifications identified from high-throughput sequencing datasets. It contains ~124200 N6-Methyladenosines (m6A), ~9500 pseudouridine (Ψ) modifications, ~1000 5-methylcytosine (m5C) modifications, ~1210 2′-O-methylations (2′-O-Me) and ~3130 other types of RNA modifications. RMBase demonstrated thousands of RNA modifications located within mRNAs, regulatory ncRNAs (e.g. lncRNAs, miRNAs, pseudogenes, circRNAs, snoRNAs, tRNAs), miRNA target sites and disease-related SNPs.
See also
References
- ^ Cite error: The named reference
pmid21037263was invoked but never defined (see the help page). - ^ Sun, WJ; Li, JH; Liu, S; Wu, J; Zhou, H; Qu, LH; Yang, JH (11 October 2015). "RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data". Nucleic acids research. PMID 26464443.