MatrixDB
 | |
| Content | |
|---|---|
| Description | MatrixDB, the extracellular matrix interaction database. |
| Organisms | Human |
| Contact | |
| Laboratory | IBCP - BMSSI - UMR5086 CNRS / Univ Lyon1 - FRANCE |
| Authors | Team SRB : Sylvie Ricard-Blum, Emilie Chautard, Nicolas Thierry-Mieg,Guillaume Launay, Romain Salza, Franck Peysselon, Marie Fatoux-Ardore, Lionel Ballut |
| Primary citation | PMID 20852260 |
| Access | |
| Standards | PSI-MI |
| Website | http://matrixdb.ibcp.fr |
MatrixDB is a freely available database focused on interactions established by extracellular proteins and polysaccharides.
MatrixDB takes into account the multimeric nature of the extracellular proteins (e.g. collagens, laminins and thrombospondins are multimers).
MatrixDB is an active member of the International Molecular Exchange (IMEx) consortium and has adopted the PSI-MI standards for annotating and exchanging interaction data.
MatrixDB includes interaction data extracted from the literature by manual curation in our lab, and offers access to relevant data involving extracellular proteins provided by our IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database.
MatrixDB is in charge of the curation of papers published in Matrix Biology since January 2009.
A major update will coming soon in 2013-2014.
.[1]
References
- ^ Chautard, Emilie (2011). "MatrixDB, the extracellular matrix interaction database". Nucleic Acids Res. (in eng). 39 (Database issue). England: D235–40. doi:10.1093/nar/gkq830. PMC 3013758. PMID 20852260.
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External links
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