User:Bci2/Books/Molecular Modeling and Dynamics


Molecular Modeling and Molecular Dynamics Simulations Molecular Modeling, Structure, Dynamics and Applications

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Modeling Methods, Molecular Dynamics, Computational Models and Computer Simulations of Molecular Systems

Copyright@2009 Bci2, Edited and originated by Bci2- with several contributors listed before the License Statement.

Quantum Chemistry, Structure and Dynamics

Molecular Dynamics, Theories and Computational Methods

Molecular Modeling Applications to Complex Biomolecules

Molecular Modeling Methods: Molecular Modeling; Quantum field theory; Local quantum field theory; Physical chemistry; Chemical physics; Computational chemistry; n-body problem; Many-body problem(quantum); Hartree–Fock method; Mean field theory; Landau theory; Flory–Huggins solution theory; Scheutjens-Fleer theory; Molecular graphics; VRML; Molecular design software; Computational chemistry
Theoretical Quantum Chemistry: Quantum chemistry; Molecular orbital theory; Linear combination of atomic orbitals molecular orbital method,LCAO MO; Hückel method,HMO; Extended Huckel method,EHMO; Generalized valence bond; Density functional theory,DFT; Møller–Plesset perturbation theory; List of quantum chemistry and solid state physics software; International Academy of Quantum Molecular Science
Molecular Dynamics, Theories and Computational Methods: Classical mechanics; Newton's laws of motion; Analytical dynamics; Force Fields; Molecular mechanics; Molecular dynamics; NAnoscale Molecular Dynamics; CHARMM; Charm++; Assisted Model Building with Energy Refinement; Optimized Potentials for Liquid Simulations; Visual Molecular Dynamics,VMD; Abalone (molecular mechanics); Statistical mechanics; Statistical field theory; Mathematical chemistry; Monte Carlo method; Quantum Monte Carlo; Dynamics of Markovian particles
Molecular Modeling Applications to Complex Biomolecules: Protein structure prediction; Protein folding; Folding@home,4p5 Peta-flop Distrib, Computing of Protein Folding Project; Protein design; Homology modeling; Loop modeling; MODELLER; Molecular models of DNA; List of nucleic acid simulation software
Molecular Networks and Complex Molecule Dynamics: Metabolic networks; Topological dynamics; Protein-protein interactions; Protein-protein interaction predictions; Proteomics; List of protein structure prediction software; Protein-DNA interaction site predictor; DNA Dynamics; DNA nanotechnology; Molecular self-assembly; Interactome; Cell signaling; Molecular evolution; Molecular phylogenetics; Computational phylogenetics