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Partition function for Interacting RNAs

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This is an old revision of this page, as edited by Rjwilmsi (talk | contribs) at 11:10, 23 June 2012 (Journal cites, added 1 PMID, using AWB (8079)). The present address (URL) is a permanent link to this revision, which may differ significantly from the current revision.

Partition function for Interacting RNAs (piRNA) is a parallel C++ package to compute joint and individual partition functions for two RNA sequences. From the partition functions, piRNA computes equilibrium concentrations of single and double species, ensemble energy, melting temperatures, and base pair probabilities. piRNA is part of TaveRNA RNA software suite.

piRNA algorithm has been published in Bioinformatics 25(12):i365-i373; doi:10.1093/bioinformatics/btp212 PMID 19478011 [1]

  1. ^ H. Chitsaz et al., A partition function algorithm for interacting nucleic acid strands, http://bioinformatics.oxfordjournals.org/cgi/content/full/25/12/i365
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