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Molecular Modeling and Dynamics

Edited and originated by Bci2- with contributors.*Copyright@2009 Bci*

Modeling Metods, Molecular Dynamics, Computational Models and Computer Simulations of Molecular Systems

Molecular Modeling Metods
Molecular Modeling
Quantum field theory(QFT)
Algebraic Quantum Field Theory
Physical chemistry
Chemical physics
Classical N-body problem
Many-body problem(quantum)
[[:Self-consistent Field Theories
Mean field theory
Landau theory
Flory–Huggins solution theory
Scheutjens-Fleer theory
Molecular graphics
Virtual Reality Modelling Language(VRML)
Molecular design software
Computational chemistry
List of software for molecular mechanics modeling
Theoretical Quantum Chemistry
Quantum chemistry
Molecular orbital theory
Linear combination of atomic orbitals molecular orbital method,LCAO MO
Hückel method(HMO)
Extended Huckel method(EHMO)
Generalized valence bond
Density functional theory(DFT)
Møller–Plesset perturbation theory
Quantum Chemistry and Solid State Physics Computer Programs
International Academy of Quantum Molecular Science
Molecular Modeling Applications to Complex Biomolecules
Protein structure prediction
Protein design
Homology modeling
Loop modeling
MODELLER
Molecular models of DNA
List of nucleic acid simulation software
Folding@home,4p5 Peta-flop Distrib. Computing of Protein Folding Project
Molecular Dynamics, Theories and Computational Methods
Classical mechanics
Newton's laws of motion
Analytical dynamics
Force Fields
Molecular mechanics
Molecular dynamics
NAnoscale Molecular Dynamics
CHARMM
Charm++
Assisted Model Building with Energy Refinement
Optimized Potentials for Liquid Simulations
Visual Molecular Dynamics(VMD)
Abalone (molecular mechanics)
Statistical mechanics
Statistical field theory
Computational chemistry
Mathematical chemistry
Monte Carlo method
Quantum Monte Carlo
Dynamics of Markovian particles
Software for molecular mechanics modeling
List of software for molecular mechanics modeling
Molecular Networks and Complex Molecule Dynamics
Metabolic networks
Topological dynamics
Protein folding
Protein-protein interactions
Protein–protein interaction predictions
Proteomics
List of protein structure prediction software
DNA Dynamics
DNA nanotechnology
Molecular self-assembly
Interactome
Cell signaling
Molecular evolution
Molecular phylogenetics
Computational phylogenetics