List of neuroscience databases
A number of online neuroscience databases are available which provide information regarding gene expression, neurons, macroscopic brain structure, and neurological and psychiatric disorders. The table below compares some of these databases.
| Name and External Link | Description | Organism | Level (gene, neuron, macroscopic) | Data (MRI, fMRI, images, descriptive, numerical) | Disorder | Register to view data? | Ref |
|---|---|---|---|---|---|---|---|
| Allen Brain Atlas [1] | Atlas, stained sections from brains showing development and gene expression | Mouse, Human | Macroscopic, Gene | Images | Healthy | No | [1]
|
| Bipolar Disorder Neuroimaging Database [2] | Meta-analysis and database of MRI studies | Human | Macroscopic | Descriptive, numerical | Bipolar Disorder | No | [2] |
| Braininfo [3] | Atas, schematic atlas of Macaca fascicularis | Macaque | Macroscopic | Schematic images | Healthy | No | |
| BrainMap.org [4] | fMRI coordinate database | Human | Macroscopic | Descriptive | Healthy | Yes | |
| BrainMaps [5] | Atlas, high resolution stained sections from brains | Human, primate and non-primate | Neuron and Macroscopic | Images | Healthy | No | [3]
|
| Brede Database [6] | fMRI coordinate database | Human | Macroscopic | Descriptive | Healthy | No | [4] |
| MSU Brain Biodiversity Bank [7] | Atlas, stained sections from brains and MRI images | Human, Sheep, Dolphin, Axolotl | Macroscopic | Images | Healthy | No | |
| Neuromorpho.org [8] | 3D models of real neurons | Human, Rat, Mouse, Monkey, others | Neuron | Images and 3D data | Healthy | No | [5]
|
| NeuronDB [9] | Database of Neuron properties and classification | Human | Neuron | Descriptive | Healthy | No | [6] |
| Open Access Series of Imaging Studies (OASIS) [10] | Structural MRI images | Human | Macroscopic | MRI datasets | Healthy and Alzheimer's Disease | Yes | [7] |
| The fMRI Data Centre [11] | fMRI datasets from published studies | Human | Macroscopic | fMRI datasets | Healthy | Yes | [8] |
| Whole Brain Atlas [12] | Atlas, Structural MRI images and PET images | Human | Macroscopic | Images | Healthy and various diseases | No |
Other databases
External Links
References
- ^ Lein, Ed S. (2007). "Genome-wide atlas of gene expression in the adult mouse brain". Nature. 445 (7124): 168–176. doi:10.1038/nature05453.
{{cite journal}}: Cite has empty unknown parameter:|month=(help); Unknown parameter|coauthors=ignored (|author=suggested) (help) - ^ Kempton, M.J., Geddes, J.R, Ettinger, U. et al. (2008).Meta-analysis, Database, and Meta-regression of 98 Structural Imaging Studies in Bipolar Disorder Archives of General Psychiatry, 65:1017–1032
- ^ Mikula, S (2007). "Internet-enabled high-resolution brain mapping and virtual microscopy". NeuroImage. 35 (1): 9–15. doi:10.1016/j.neuroimage.2006.11.053. PMC 1890021. PMID 17229579.
{{cite journal}}: Unknown parameter|coauthors=ignored (|author=suggested) (help) - ^ Nielsen, F.A. (2003). The Brede database: a small database for functional neuroimaging NeuroImage 19(2), Presented at the 9th International Conference on Functional Mapping of the Human Brain, June 19--22, 2003, New York, NY. Available on CD-Rom
- ^ Ascoli GA, Donohue DE, Halavi M. (2007). NeuroMorpho.Org: a central resource for neuronal morphologiesJ Neurosci., 27(35):9247-51 .
- ^ Mirsky JS, Nadkarni PM, Healy MD, Miller PL, Shepherd GM (1998) "Database tools for integrating and searching membrane property data correlated with neuronal morphology, J Neurosci Methods. 1998 Jul 1;82(1):105-21.
- ^ Marcus DS, Wang TH, Parker J, Csernansky JG, Morris JC, Buckner RL (2007) Open Access Series of Imaging Studies (OASIS): cross-sectional MRI data in young, middle aged, nondemented, and demented older adults.J Cogn Neurosci. 2007 Sep;19(9):1498-507.
- ^ Van Horn JD, Grethe JS, Kostelec P, Woodward JB, Aslam JA, Rus D, Rockmore D, Gazzaniga MS (2001) The Functional Magnetic Resonance Imaging Data Center (fMRIDC): the challenges and rewards of large-scale databasing of neuroimaging studiesPhilos Trans R Soc Lond B Biol Sci Aug 29;356(1412):1323-39