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User:WillowW/List of non-coding RNA

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The following table lists the 574 known families of non-coding RNA and other types of structural or regulatory RNA. We may very well want to change the names in the first column, to make them more explanatory for casual readers. :)

Families of non-coding and other structural/regulatory RNA
Name | Rfam ID Type # of sequences in seed alignment # of sequences in full alignment Average length Average sequence identity Description
5S_rRNA RF00001 Gene; rRNA; 602 12117 116.8 61 5S ribosomal RNA
5_8S_rRNA RF00002 Gene; rRNA; 63 84358 153.4 78 5.8S ribosomal RNA
U1 RF00003 Gene; snRNA; splicing; 100 857 161.1 69 U1 spliceosomal RNA
U2 RF00004 Gene; snRNA; splicing; 77 551 177.6 62 U2 spliceosomal RNA
tRNA RF00005 Gene; tRNA; 1088 84974 72.7 44 tRNA
Vault RF00006 Gene; 11 22 103.0 74 Vault RNA
U12 RF00007 Gene; snRNA; splicing; 8 21 160.4 67 U12 minor spliceosomal RNA
Hammerhead_3 RF00008 Gene; ribozyme; 84 252 54.2 77 Hammerhead ribozyme (type III)
RNaseP_nuc RF00009 Gene; ribozyme; 59 110 298.8 42 Nuclear RNase P
RNaseP_bact_a RF00010 Gene; ribozyme; 116 473 310.0 59 Bacterial RNase P class A
RNaseP_bact_b RF00011 Gene; ribozyme; 31 164 369.7 67 Bacterial RNase P class B
U3 RF00012 Gene; snRNA; guide; CD-box; 21 227 227.2 51 Small nucleolar RNA U3
6S RF00013 Gene; 77 172 182.4 43 6S / SsrS RNA
DsrA RF00014 Gene; sRNA; 4 16 85.8 93 DsrA RNA
U4 RF00015 Gene; snRNA; splicing; 30 270 137.9 63 U4 spliceosomal RNA
SNORD14 RF00016 Gene; snRNA; guide; CD-box; 18 218 108.6 64 Small nucleolar RNA SNORD14
SRP_euk_arch RF00017 Gene; 50 433 292.5 39 Eukaryotic type signal recognition particle RNA
CsrB RF00018 Gene; sRNA; 7 43 359.7 54 CsrB/RsmB RNA family
Y RF00019 Gene; 16 1278 101.7 67 Y RNA
U5 RF00020 Gene; snRNA; splicing; 33 273 117.7 61 U5 spliceosomal RNA
Spot_42 RF00021 Gene; sRNA; 6 27 117.9 90 Spot 42 RNA
GcvB RF00022 Gene; 17 29 140.6 64 GcvB RNA
tmRNA RF00023 Gene; 178 350 351.3 46 tmRNA
Telomerase-vert RF00024 Gene; 37 60 430.7 57 Vertebrate telomerase RNA
Telomerase-cil RF00025 Gene; 24 22 179.0 52 Ciliate telomerase RNA
U6 RF00026 Gene; snRNA; splicing; 53 2599 105.7 77 U6 spliceosomal RNA
let-7 RF00027 Gene; miRNA; 14 94 82.1 73 let-7 microRNA precursor
Intron_gpI RF00028 Intron; 30 20085 397.7 53 Group I catalytic intron
Intron_gpII RF00029 Intron; 114 8189 77.9 54 Group II catalytic intron
RNase_MRP RF00030 Gene; ribozyme; 27 45 264.5 51 RNase MRP
SECIS RF00031 Cis-reg; 63 299 64.2 43 Selenocysteine insertion sequence
Histone3 RF00032 Cis-reg; 64 1046 26.0 78 Histone 3' UTR stem-loop
MicF RF00033 Gene; antisense; 8 24 91.6 83 MicF RNA
RprA RF00034 Gene; sRNA; 7 19 108.7 81 RprA RNA
OxyS RF00035 Gene; sRNA; 5 18 106.2 93 OxyS RNA
RRE RF00036 Cis-reg; 65 3972 311.9 87 HIV Rev response element
IRE RF00037 Cis-reg; 39 318 29.0 63 Iron response element
PrfA RF00038 Cis-reg; thermoregulator; 11 130 130.2 97 PrfA thermoregulator UTR
DicF RF00039 Gene; antisense; 6 29 52.0 73 DicF RNA
rne5 RF00040 Cis-reg; 9 25 336.6 76 RNase E 5' UTR element
Entero_OriR RF00041 Cis-reg; 60 96 119.5 87 Enteroviral 3' UTR element
CopA RF00042 Gene; antisense; 17 42 90.2 84 CopA-like RNA
Plasmid_R1162 RF00043 Gene; antisense; 3 9 73.2 67 R1162-like plasmid antisense RNA
Phage_pRNA RF00044 Gene; 3 5 215.2 76 Bacteriophage pRNA
SNORA73 RF00045 Gene; snRNA; guide; HACA-box; 23 71 207.7 71 Small nucleolar RNA SNORA73
snoR30 RF00046 Gene; snRNA; guide; CD-box; 6 30 95.6 89 Small nucleolar RNA R30/Z108
mir-2 RF00047 Gene; miRNA; 9 25 70.1 71 mir-2 microRNA precursor
Entero_CRE RF00048 Cis-reg; 56 262 61.0 81 Enterovirus cis-acting replication element
SNORD36 RF00049 Gene; snRNA; guide; CD-box; 20 129 78.5 66 Small nucleolar RNA SNORD36
FMN RF00050 Cis-reg; riboswitch; 34 183 144.7 65 FMN riboswitch (RFN element)
mir-17 RF00051 Gene; miRNA; 54 63 82.1 69 mir-17 microRNA precursor family
lin-4 RF00052 Gene; miRNA; 9 39 70.1 73 lin-4 microRNA precursor
mir-7 RF00053 Gene; miRNA; 6 29 88.2 73 mir-7 microRNA precursor
SNORD25 RF00054 Gene; snRNA; guide; CD-box; 8 39 81.4 65 Small nucleolar RNA SNORD25
snoZ37 RF00055 Gene; snRNA; guide; CD-box; 9 39 90.5 65 Small nucleolar RNA Z37
SNORA71 RF00056 Gene; snRNA; guide; HACA-box; 15 37 128.6 71 Small nucleolar RNA SNORA71
RyhB RF00057 Gene; sRNA; 13 41 83.0 72 RyhB RNA
HgcF RF00058 Gene; 3 5 168.6 89 HgcF RNA
TPP RF00059 Cis-reg; riboswitch; 174 496 109.2 52 TPP riboswitch (THI element)
HgcE RF00060 Gene; 3 5 130.0 81 HgcE RNA
IRES_HCV RF00061 Cis-reg; IRES; 821 3632 206.5 90 Hepatitis C virus internal ribosome entry site
HgcC RF00062 Gene; 4 38 166.7 60 HgcC family RNA
SscA RF00063 Gene; 4 6 96.3 75 SscA RNA
HgcG RF00064 Gene; 2 6 239.5 76 HgcG RNA
snoR9 RF00065 Gene; snRNA; guide; CD-box; 3 5 127.8 84 Small nucleolar RNA snoR9
U7 RF00066 Gene; snRNA; 24 353 49.0 69 U7 small nuclear RNA
SNORD15 RF00067 Gene; snRNA; guide; CD-box; 18 49 113.1 63 Small nucleolar RNA SNORD15
SNORD21 RF00068 Gene; snRNA; guide; CD-box; 5 12 89.1 66 Small nucleolar RNA SNORD21
SNORD24 RF00069 Gene; snRNA; guide; CD-box; 14 102 81.6 72 Small nucleolar RNA SNORD24
SNORD29 RF00070 Gene; snRNA; guide; CD-box; 10 19 75.1 70 Small nucleolar RNA SNORD29
SNORD73 RF00071 Gene; snRNA; guide; CD-box; 4 15 68.7 84 Small nucleolar RNA SNORD73
SNORA75 RF00072 Gene; snRNA; guide; HACA-box; 6 23 130.4 73 Small nucleolar RNA SNORA75
mir-156 RF00073 Gene; miRNA; 10 47 93.5 67 mir-156 microRNA precursor
mir-29 RF00074 Gene; miRNA; 10 53 67.9 80 mir-29 microRNA precursor
mir-166 RF00075 Gene; miRNA; 30 63 123.2 57 mir-166 microRNA precursor
mir-181 RF00076 Gene; miRNA; 4 25 75.3 83 mir-181 microRNA precursor
SraB RF00077 Gene; sRNA; 3 14 168.6 90 SraB RNA
SraD RF00078 Gene; sRNA; 3 25 75.5 87 SraD RNA
SraE_RygA_RygB RF00079 Gene; sRNA; 4 30 86.9 82 SraE/RygA/RygB family RNA
yybP-ykoY RF00080 Cis-reg; 50 142 124.5 45 yybP-ykoY leader
SraH RF00081 Gene; sRNA; 2 19 108.4 79 SraH RNA
SraG RF00082 Gene; sRNA; 5 26 173.4 82 SraG RNA
SraJ RF00083 Gene; sRNA; 4 16 173.9 91 SraJ RNA
CsrC RF00084 Gene; sRNA; 4 18 254.6 77 CsrC RNA family
SNORD28 RF00085 Gene; snRNA; guide; CD-box; 4 8 77.2 72 Small nucleolar RNA SNORD28
SNORD27 RF00086 Gene; snRNA; guide; CD-box; 11 28 77.9 68 Small nucleolar RNA SNORD27
SNORD26 RF00087 Gene; snRNA; guide; CD-box; 4 8 74.4 82 Small nucleolar RNA SNORD26
SNORD30 RF00088 Gene; snRNA; guide; CD-box; 3 10 70.0 78 Small nucleolar RNA SNORD30
SNORD31 RF00089 Gene; snRNA; guide; CD-box; 4 12 69.0 79 Small nucleolar RNA SNORD31
SNORA74 RF00090 Gene; snRNA; guide; HACA-box; 3 9 197.8 76 Small nucleolar RNA SNORA74
SNORA62 RF00091 Gene; snRNA; guide; HACA-box; 10 26 148.2 71 Small nucleolar RNA SNORA62
SNORA63 RF00092 Gene; snRNA; guide; HACA-box; 8 37 126.3 71 Small nucleolar RNA SNORA63
SNORD18 RF00093 Gene; snRNA; guide; CD-box; 16 70 76.4 60 Small nucleolar RNA SNORD18
HDV_ribozyme RF00094 Gene; ribozyme; 15 82 88.8 95 Hepatitis delta virus ribozyme
snoPyro_CD RF00095 Gene; snRNA; guide; CD-box; 38 58 56.2 59 Pyrococcus C/D box small nucleolar RNA
U8 RF00096 Gene; snRNA; guide; CD-box; 6 38 133.8 60 U8 small nucleolar RNA
snoR71 RF00097 Gene; snRNA; guide; CD-box; 21 370 106.5 77 Plant small nucleolar RNA R71
HACA_sno_Snake RF00098 Gene; snRNA; guide; HACA-box; 22 55 140.3 90 Snake H/ACA box small nucleolar RNA
SNORD22 RF00099 Gene; snRNA; guide; CD-box; 3 9 125.8 84 Small nucleolar RNA SNORD22
7SK RF00100 Gene; 6 171 317.0 72 7SK RNA
SraC_RyeA RF00101 Gene; sRNA; 4 19 242.7 76 SraC/RyeA RNA
VA RF00102 Gene; 54 157 158.9 70 VA RNA
mir-1 RF00103 Gene; miRNA; 7 27 76.7 71 mir-1 microRNA precursor family
mir-10 RF00104 Gene; miRNA; 11 73 73.8 67 mir-10 microRNA precursor family
SNORD115 RF00105 Gene; snRNA; guide; CD-box; 23 133 81.1 90 Small nucleolar RNA SNORD115
RNAI RF00106 Gene; antisense; 10 138 103.5 71 RNAI
FinP RF00107 Gene; 6 15 77.6 91 FinP
SNORD116 RF00108 Gene; snRNA; guide; CD-box; 7 85 92.2 80 Small nucleolar RNA SNORD116
Vimentin3 RF00109 Cis-reg; 19 45 66.1 80 Vimentin 3' UTR protein-binding region
RybB RF00110 Gene; sRNA; 3 19 79.5 89 RybB RNA
RyeB RF00111 Gene; sRNA; 4 19 97.3 92 RyeB RNA
RyeE RF00112 Gene; sRNA; 2 22 84.8 80 RyeE RNA
QUAD RF00113 Gene; sRNA; 14 50 146.9 77 QUAD RNA
S15 RF00114 Cis-reg; leader; 47 51 117.4 64 Ribosomal S15 leader
IS061 RF00115 Gene; sRNA; 6 9 180.4 93 IS061 RNA
C0465 RF00116 Gene; sRNA; 2 10 77.6 100 C0465 RNA
C0719 RF00117 Gene; sRNA; 2 7 210.3 99 C0719 RNA
rydB RF00118 Gene; sRNA; 2 13 67.6 96 rydB RNA
C0299 RF00119 Gene; sRNA; 2 11 79.0 98 C0299 RNA
C0343 RF00120 Gene; sRNA; 2 14 75.0 87 C0343 RNA
MicC RF00121 Gene; sRNA; 5 15 121.6 86 MicC RNA
GadY RF00122 Gene; sRNA; 2 8 114.0 100 GadY
IS102 RF00124 Gene; sRNA; 7 13 202.3 91 IS102 RNA
IS128 RF00125 Gene; sRNA; 2 5 209.0 99 IS128 RNA
ryfA RF00126 Gene; sRNA; 4 13 301.1 85 ryfA RNA
t44 RF00127 Gene; sRNA; 7 27 145.8 72 t44 RNA
tke1 RF00128 Gene; sRNA; 4 18 153.4 87 tke1 RNA
mir-103 RF00129 Gene; miRNA; 5 29 78.0 85 mir-103/107 microRNA precursor
mir-192 RF00130 Gene; miRNA; 4 12 106.0 75 mir-192/215 microRNA precursor
mir-30 RF00131 Gene; miRNA; 4 21 70.8 82 mir-30 microRNA precursor
snoR24 RF00132 Gene; snRNA; guide; CD-box; 12 45 92.4 81 Small nucleolar RNA R24
snoZ195 RF00133 Gene; snRNA; guide; CD-box; 17 43 85.0 65 Small nucleolar RNA Z195/SNORD33 family
snoZ196 RF00134 Gene; snRNA; guide; CD-box; 23 43 84.4 64 Small nucleolar RNA Z196/R39/R59 family
snoZ223 RF00135 Gene; snRNA; guide; CD-box; 5 35 90.4 82 Small nucleolar RNA Z223
SNORD81 RF00136 Gene; snRNA; guide; CD-box; 3 19 76.5 82 Small nucleolar RNA SNORD81
SNORD83 RF00137 Gene; snRNA; guide; CD-box; 7 56 76.9 85 Small nucleolar RNA SNORD83
SNORD16 RF00138 Gene; snRNA; guide; CD-box; 5 11 98.5 81 Small nucleolar RNA SNORD16
SNORA72 RF00139 Gene; snRNA; guide; HACA-box; 7 17 136.5 81 Small nucleolar RNA SNORA72
Alpha_RBS RF00140 Cis-reg; 15 44 109.2 69 Alpha operon ribosome binding site
snoZ118 RF00142 Gene; snRNA; guide; CD-box; 7 42 103.2 81 Small nucleolar RNA Z118/Z121/Z120
mir-6 RF00143 Gene; miRNA; 3 9 77.0 79 mir-6 microRNA precursor
mir-199 RF00144 Gene; miRNA; 3 18 99.9 88 mir-199 microRNA precursor
snoZ105 RF00145 Gene; snRNA; guide; CD-box; 5 17 69.0 79 Small nucleolar RNA Z105
SNORD34 RF00147 Gene; snRNA; guide; CD-box; 9 34 79.4 67 Small nucleolar RNA SNORD34
snoZ103 RF00149 Gene; snRNA; guide; CD-box; 9 42 98.3 78 Small nucleolar RNA Z103
SNORD42 RF00150 Gene; snRNA; guide; CD-box; 7 14 64.3 76 Small nucleolar RNA SNORD42
SNORD58 RF00151 Gene; snRNA; guide; CD-box; 3 20 65.6 81 Small nucleolar RNA SNORD58
SNORD79 RF00152 Gene; snRNA; guide; CD-box; 6 9 74.4 83 Small nucleolar RNA SNORD79
SNORD62 RF00153 Gene; snRNA; guide; CD-box; 3 8 85.5 94 Small nucleolar RNA SNORD62
SNORD63 RF00154 Gene; snRNA; guide; CD-box; 2 3 68.7 90 Small nucleolar RNA SNORD63
SNORA66 RF00155 Gene; snRNA; guide; HACA-box; 3 8 132.2 85 Small nucleolar RNA SNORA66
SNORA70 RF00156 Gene; snRNA; guide; HACA-box; 13 90 130.7 70 Small nucleolar RNA SNORA70
SNORD39 RF00157 Gene; snRNA; guide; CD-box; 4 15 78.3 79 Small nucleolar RNA SNORD39
SNORD82 RF00158 Gene; snRNA; guide; CD-box; 3 10 69.8 88 Small nucleolar RNA SNORD82
snoZ168 RF00159 Gene; snRNA; guide; CD-box; 6 18 82.2 87 Small nucleolar RNA Z168/Z174
snoZ159 RF00160 Gene; snRNA; guide; CD-box; 10 37 87.7 76 Small nucleolar RNA Z159/U59
nos_TCE RF00161 Cis-reg; 3 16 63.1 90 Nanos 3' UTR translation control element
SAM RF00162 Cis-reg; riboswitch; 48 298 110.8 66 SAM riboswitch (S box leader)
Hammerhead_1 RF00163 Gene; ribozyme; 75 62 47.0 69 Hammerhead ribozyme (type I)
s2m RF00164 Cis-reg; 38 302 43.0 79 Coronavirus 3' stem-loop II-like motif (s2m)
Corona_pk3 RF00165 Cis-reg; 14 85 62.5 70 Coronavirus 3' UTR pseudoknot
PrrB_RsmZ RF00166 Gene; sRNA; 12 17 157.4 75 PrrB/RsmZ RNA family
Purine RF00167 Cis-reg; riboswitch; 22 122 102.1 56 Purine riboswitch
Lysine RF00168 Cis-reg; riboswitch; 43 112 182.2 49 Lysine riboswitch
SRP_bact RF00169 Gene; 62 285 98.9 50 Bacterial signal recognition particle RNA
msr RF00170 Gene; 8 12 71.3 58 Retron msr RNA
Tombus_5 RF00171 Cis-reg; 9 40 108.1 59 Tombusvirus 5' UTR
CAESAR RF00172 Cis-reg; 9 41 78.9 83 ctgf/hcs24 CAESAR
Hairpin RF00173 Gene; ribozyme; 3 5 51.2 82 Hairpin ribozyme
Cobalamin RF00174 Cis-reg; riboswitch; 128 306 204.5 47 Cobalamin riboswitch
Retroviral_psi RF00175 Cis-reg; 173 1364 105.7 84 Retroviral Psi packaging element
Tombus_3_IV RF00176 Cis-reg; 18 77 64.5 94 Tombusvirus 3' UTR region IV
SSU_rRNA_5 RF00177 Gene; rRNA; 358 343 487.3 48 Small subunit ribosomal RNA, 5' domain
mir-24 RF00178 Gene; miRNA; 3 21 67.7 86 mir-24 microRNA precursor family
GAIT RF00179 Cis-reg; 8 11 71.1 96 GAIT element
REN-SRE RF00180 Cis-reg; 13 30 37.0 90 Renin stability regulatory element (REN-SRE)
SNORD113 RF00181 Gene; snRNA; guide; CD-box; 59 81 75.3 64 C/D box small nucleolar RNA SNORD113/SNORD114 family
Corona_package RF00182 Cis-reg; 15 23 129.0 82 Coronavirus packaging signal
G-CSF_SLDE RF00183 Cis-reg; 6 19 94.2 86 G-CSF factor stem-loop destabilising element (SLDE)
PVX_3 RF00184 Cis-reg; 3 21 54.0 97 Potato virus X cis-acting regulatory element
Flavi_CRE RF00185 Cis-reg; 84 303 95.4 69 Flavivirus 3' UTR cis-acting replication element (CRE)
SNORD101 RF00186 Gene; snRNA; guide; CD-box; 3 6 73.2 89 Small nucleolar RNA SNORD101
SNORD102 RF00187 Gene; snRNA; guide; CD-box; 2 4 71.8 94 Small nucleolar RNA SNORD102
SNORD103 RF00188 Gene; snRNA; guide; CD-box; 3 5 89.8 96 Small nucleolar RNA SNORD103
SNORD95 RF00189 Gene; snRNA; guide; CD-box; 5 12 68.3 80 Small nucleolar RNA SNORD95
U98 RF00190 Gene; snRNA; guide; HACA-box; 3 14 133.3 78 U98 small nucleolar RNA
SNORA57 RF00191 Gene; snRNA; guide; HACA-box; 3 10 145.1 83 Small nucleolar RNA SNORA57
BLV_package RF00192 Cis-reg; 5 5 55.0 97 Bovine leukaemia virus RNA packaging signal
CTV_rep_sig RF00193 Cis-reg; 9 24 258.2 91 Citrus tristeza virus replication signal
Rubella_3 RF00194 Cis-reg; 25 93 63.2 97 Rubella virus 3' cis-acting element
RsmY RF00195 Gene; sRNA; 4 9 121.4 84 RsmY RNA family
AMV_RNA1_SL RF00196 Cis-reg; 4 8 35.0 96 Alfalfa mosaic virus RNA 1 5' UTR stem-loop
RbcL_stabil RF00197 Cis-reg; 3 25 45.6 67 rbcL 5' UTR RNA stabilising element
SL1 RF00198 Gene; 32 98 103.4 73 SL1 RNA
SL2 RF00199 Gene; 32 37 109.0 73 SL2 RNA
snoZ199 RF00200 Gene; snRNA; guide; CD-box; 17 38 83.1 79 Small nucleolar RNA Z199
snoZ278 RF00201 Gene; snRNA; guide; CD-box; 7 19 114.7 94 Small nucleolar RNA Z278
snoR66 RF00202 Gene; snRNA; guide; CD-box; 6 35 73.2 89 Small nucleolar RNA R66
snoR160 RF00203 Gene; snRNA; guide; CD-box; 9 21 78.4 76 Small nucleolar RNA R160
snoR12 RF00204 Gene; snRNA; guide; CD-box; 9 66 80.8 82 Small nucleolar RNA R12
snoR41 RF00205 Gene; snRNA; guide; CD-box; 7 15 95.4 85 Small nucleolar RNA R41
SNORD54 RF00206 Gene; snRNA; guide; CD-box; 22 45 80.2 70 Small nucleolar RNA SNORD54
K10_TLS RF00207 Cis-reg; 3 6 44.0 100 K10 transport/localisation element (TLS)
snoR72 RF00208 Gene; snRNA; guide; CD-box; 4 10 87.0 98 Small nucleolar RNA R72
IRES_Pesti RF00209 Cis-reg; IRES; 25 997 249.1 80 Pestivirus internal ribosome entry site (IRES)
IRES_Aptho RF00210 Cis-reg; IRES; 92 188 461.5 73 Aphthovirus internal ribosome entry site (IRES)
SNORD35 RF00211 Gene; snRNA; guide; CD-box; 8 17 88.1 76 Small nucleolar RNA SNORD35
SNORD38 RF00212 Gene; snRNA; guide; CD-box; 7 23 69.0 76 Small nucleolar RNA SNORD38
snoR38 RF00213 Gene; snRNA; guide; CD-box; 19 50 84.4 58 Small nucleolar RNA R38
Retro_dr1 RF00214 Cis-reg; 26 124 89.2 86 Retrovirus direct repeat 1 (dr1)
Tombus_3_III RF00215 Cis-reg; 28 66 69.6 79 Tombus virus defective interfering (DI) RNA region 3
IRES_c-myc RF00216 Cis-reg; IRES; 23 54 296.5 79 c-myc internal ribosome entry site (IRES)
SNORD20 RF00217 Gene; snRNA; guide; CD-box; 4 6 80.2 100 Small nucleolar RNA SNORD20
SNORD46 RF00218 Gene; snRNA; guide; CD-box; 9 27 87.9 70 Small nucleolar RNA SNORD46
SNORD32 RF00219 Gene; snRNA; guide; CD-box; 4 21 82.0 90 Small nucleolar RNA SNORD32
Rhino_CRE RF00220 Cis-reg; 12 60 85.5 72 Human rhinovirus internal cis-acting regulatory element (CRE)
SNORD43 RF00221 Gene; snRNA; guide; CD-box; 7 19 85.7 61 Small nucleolar RNA SNORD43
IRES_Bag1 RF00222 Cis-reg; IRES; 4 15 349.8 86 Bag-1 internal ribosome entry site (IRES)
IRES_Bip RF00223 Cis-reg; IRES; 4 10 236.4 74 bip internal ribosome entry site (IRES)
IRES_FGF2 RF00224 Cis-reg; IRES; 3 9 435.2 95 FGF-2 internal ribosome entry site (IRES)
IRES_Tobamo RF00225 Cis-reg; IRES; 7 11 152.1 86 Tobamovirus internal ribosome entry site (IRES)
IRES_n-myc RF00226 Cis-reg; IRES; 6 29 269.7 57 n-myc internal ribosome entry site (IRES)
FIE3 RF00227 Cis-reg; 5 10 65.0 77 FIE3 (ftz instability element 3') element
IRES_HepA RF00228 Cis-reg; IRES; 23 137 389.0 95 Hepatitis A virus internal ribosome entry site (IRES)
IRES_Picorna RF00229 Cis-reg; IRES; 208 1512 205.1 80 Picornavirus internal ribosome entry site (IRES)
T-box RF00230 Cis-reg; 103 716 226.8 46 T-box leader
SCARNA13 RF00231 Gene; snRNA; guide; scaRNA; 3 7 273.4 86 Small Cajal body specific RNA 13
Spi-1 RF00232 Cis-reg; 5 10 165.2 89 Spi-1 (PU.1) 5' UTR regulatory element
Tymo_tRNA-like RF00233 Cis-reg; 28 82 78.5 64 Tymovirus/Pomovirus tRNA-like 3' UTR element
glmS RF00234 Cis-reg; riboswitch; 11 44 186.5 60 glmS glucosamine-6-phosphate activated ribozyme
Plasmid_RNAIII RF00235 Gene; 7 9 130.0 95 Plasmid RNAIII
ctRNA_pGA1 RF00236 Gene; antisense; 15 21 78.6 72 ctRNA
mir-9 RF00237 Gene; miRNA; 5 34 61.3 85 mir-9/mir-79 microRNA precursor family
ctRNA_pND324 RF00238 Gene; antisense; 48 52 85.3 71 ctRNA
mir-124 RF00239 Gene; miRNA; 6 25 80.6 85 mir-124 microRNA precursor family
RNA-OUT RF00240 Gene; 4 172 70.0 96 RNA-OUT
mir-8 RF00241 Gene; miRNA; 9 24 77.2 64 mir-8/mir-141/mir-200 microRNA precursor family
ctRNA_pT181 RF00242 Gene; antisense; 16 21 95.0 77 ctRNA
traJ_5 RF00243 Cis-reg; 6 15 108.8 88 traJ 5' UTR
mir-26 RF00244 Gene; miRNA; 5 24 73.5 80 mir-26 microRNA precursor family
mir-19 RF00245 Gene; miRNA; 3 43 75.4 82 mir-19 microRNA precursor family
mir-135 RF00246 Gene; miRNA; 5 22 90.2 75 mir-135 microRNA precursor family
mir-160 RF00247 Gene; miRNA; 7 33 94.5 65 mir-160 microRNA precursor family
mir-148 RF00248 Gene; miRNA; 5 9 86.2 71 mir-148/mir-152 microRNA precursor family
mir-46 RF00249 Gene; miRNA; 4 8 76.0 78 mir-46/mir-47/mir-281 microRNA precursor family
TAR RF00250 Cis-reg; 426 2004 56.7 91 Trans-activation response element (TAR)
mir-219 RF00251 Gene; miRNA; 7 31 72.3 79 mir-219 microRNA precursor family
Alfamo_CPB RF00252 Cis-reg; 18 23 159.4 90 Alfalfa mosaic virus coat protein binding (CPB) RNA
mir-101 RF00253 Gene; miRNA; 4 20 75.0 89 mir-101 microRNA precursor family
mir-16 RF00254 Gene; miRNA; 12 37 80.4 76 mir-16 microRNA precursor family
mir-218 RF00255 Gene; miRNA; 3 23 96.1 80 mir-218 microRNA precursor family
mir-196 RF00256 Gene; miRNA; 14 45 91.1 73 mir-196 microRNA precursor family
mir-194 RF00257 Gene; miRNA; 4 13 85.0 79 mir-194 microRNA precursor family
mir-130 RF00258 Gene; miRNA; 3 15 82.5 72 mir-130 microRNA precursor family
IFN_gamma RF00259 Cis-reg; 5 13 160.2 85 Interferon gamma 5' UTR regulatory element
HepC_CRE RF00260 Cis-reg; 52 348 51.0 87 Hepatitis C virus (HCV) cis-acting replication element (CRE)
IRES_L-myc RF00261 Cis-reg; IRES; 3 5 220.2 94 L-myc internal ribosome entry site (IRES)
sar RF00262 Gene; antisense; 4 7 65.9 87 sar RNA
SNORA68 RF00263 Gene; snRNA; guide; HACA-box; 4 12 127.4 76 Small nucleolar RNA SNORA68
SNORA64 RF00264 Gene; snRNA; guide; HACA-box; 9 17 132.4 70 Small nucleolar RNA SNORA64/SNORA10 family
SNORA69 RF00265 Gene; snRNA; guide; HACA-box; 3 9 132.1 76 Small nucleolar RNA SNORA69
snoZ17 RF00266 Gene; snRNA; guide; CD-box; 4 8 71.8 79 Small nucleolar RNA Z17
snoR64 RF00267 Gene; snRNA; guide; CD-box; 11 24 94.2 70 Small nucleolar RNA R64/Z200 family
snoZ7 RF00268 Gene; snRNA; guide; CD-box; 3 9 80.2 82 Small nucleolar RNA snoZ7/snoR77
SNORD61 RF00270 Gene; snRNA; guide; CD-box; 3 6 71.3 87 Small nucleolar RNA SNORD61
SNORD60 RF00271 Gene; snRNA; guide; CD-box; 3 9 81.7 87 Small nucleolar RNA SNORD60
SNORA67 RF00272 Gene; snRNA; guide; HACA-box; 10 21 139.9 73 Small nucleolar RNA SNORA67
SNORD59 RF00273 Gene; snRNA; guide; CD-box; 4 11 72.1 83 Small nucleolar RNA SNORD59
SNORD57 RF00274 Gene; snRNA; guide; CD-box; 3 5 69.6 88 Small nucleolar RNA SNORD57
SNORD56 RF00275 Gene; snRNA; guide; CD-box; 7 14 70.8 84 Small nucleolar RNA SNORD56
SNORD52 RF00276 Gene; snRNA; guide; CD-box; 4 19 66.4 80 Small nucleolar RNA SNORD52
SNORD49 RF00277 Gene; snRNA; guide; CD-box; 4 10 68.6 73 Small nucleolar RNA SNORD49
SNORD50 RF00278 Gene; snRNA; guide; CD-box; 6 12 70.8 83 Small nucleolar RNA SNORD50
SNORD45 RF00279 Gene; snRNA; guide; CD-box; 11 18 75.7 80 Small nucleolar RNA SNORD45
SNORD51 RF00280 Gene; snRNA; guide; CD-box; 3 4 75.0 88 Small nucleolar RNA SNORD51
SNORD47 RF00281 Gene; snRNA; guide; CD-box; 3 11 74.9 88 Small nucleolar RNA SNORD47
SNORD48 RF00282 Gene; snRNA; guide; CD-box; 3 13 63.2 92 Small nucleolar RNA SNORD48
SCARNA18 RF00283 Gene; snRNA; guide; scaRNA; 4 18 80.3 86 small Cajal body-specific RNA 18
snoZ18 RF00284 Gene; snRNA; guide; CD-box; 4 19 76.2 76 Z18 small nucleolar RNA
snoZ6 RF00285 Gene; snRNA; guide; CD-box; 3 18 86.0 77 Z6 small nucleolar RNA
SCARNA8 RF00286 Gene; snRNA; guide; scaRNA; 3 5 128.4 81 Small Cajal body specific RNA 8
SNORD44 RF00287 Gene; snRNA; guide; CD-box; 3 5 60.6 92 Small nucleolar RNA SNORD44
snoZ30 RF00288 Gene; snRNA; guide; CD-box; 4 12 97.4 83 Z30 small nucleolar RNA
snoZ12 RF00289 Gene; snRNA; guide; CD-box; 3 5 70.0 87 Z12 small nucleolar RNA
BaMV_CRE RF00290 Cis-reg; 4 14 140.0 100 Bamboo mosaic potexvirus (BaMV) cis-regulatory element
snoR639 RF00291 Gene; snRNA; guide; HACA-box; 3 6 138.0 100 Small nucleolar RNA snoR639/H1
snoTBR5 RF00292 Gene; snRNA; guide; CD-box; 3 5 90.0 80 Small nucleolar RNA TBR5
snoM1 RF00293 Gene; snRNA; guide; HACA-box; 3 8 99.6 91 Small nucleolar RNA snoM1
snoTBR17 RF00294 Gene; snRNA; guide; CD-box; 5 8 270.5 74 Small nucleolar RNA TBR17
snoTBR7 RF00295 Gene; snRNA; guide; CD-box; 6 9 74.8 80 Small nucleolar RNA TBR7
snoR16 RF00296 Gene; snRNA; guide; CD-box; 17 18 84.8 77 Small nucleolar RNA R16
snoZ221 RF00300 Gene; snRNA; guide; CD-box; 3 7 112.4 96 Small nucleolar RNA Z221
snoZ256 RF00301 Gene; snRNA; guide; CD-box; 5 10 94.4 75 Small nucleolar RNA Z256
SNORA65 RF00302 Gene; snRNA; guide; HACA-box; 8 9 123.9 81 Small nucleolar RNA SNORA65
snoR86 RF00303 Gene; snRNA; guide; HACA-box; 3 3 125.3 87 Small nucleolar RNA snoR86
snoZ279 RF00304 Gene; snRNA; guide; CD-box; 3 7 111.1 94 Small nucleolar RNA Z279
snoZ248 RF00305 Gene; snRNA; guide; CD-box; 4 10 137.0 98 Small nucleolar RNA Z248
snoZ178 RF00306 Gene; snRNA; guide; CD-box; 4 6 152.0 100 Small nucleolar RNA Z178
snoR98 RF00307 Gene; snRNA; guide; HACA-box; 4 5 110.4 87 Small nucleolar RNA snoR98
snosnR60_Z15 RF00309 Gene; snRNA; guide; CD-box; 23 43 93.4 64 Small nucleolar RNA snR60/Z15/Z230/Z193/J17
snoZ165 RF00310 Gene; snRNA; guide; CD-box; 3 8 90.9 95 Small nucleolar RNA Z165
snoZ188 RF00311 Gene; snRNA; guide; CD-box; 7 20 119.7 78 Small nucleolar RNA Z188
snoZ206 RF00312 Gene; snRNA; guide; CD-box; 3 12 130.3 89 Small nucleolar RNA Z206
snoZ173 RF00313 Gene; snRNA; guide; CD-box; 3 5 106.6 100 Small nucleolar RNA Z173
snoZ182 RF00314 Gene; snRNA; guide; CD-box; 4 9 88.7 96 Small nucleolar RNA Z182
snoJ33 RF00315 Gene; snRNA; guide; CD-box; 3 24 80.9 67 Small nucleolar RNA J33
snoR43 RF00316 Gene; snRNA; guide; CD-box; 16 20 73.1 83 Small nucleolar RNA R43
snoZ163 RF00317 Gene; snRNA; guide; CD-box; 7 15 88.5 85 Small nucleolar RNA Z163/Z177 family
snoZ175 RF00318 Gene; snRNA; guide; CD-box; 3 5 81.0 99 Small nucleolar RNA Z175
snoMBI-1 RF00319 Gene; snRNA; guide; HACA-box; 5 7 182.4 83 Small nucleolar RNA MBI-1
snoZ185 RF00320 Gene; snRNA; guide; CD-box; 2 8 84.2 92 Small nucleolar RNA Z185
snoZ247 RF00321 Gene; snRNA; guide; CD-box; 8 32 137.3 71 Small nucleolar RNA Z247
snoMBI-161 RF00322 Gene; snRNA; guide; HACA-box; 5 8 127.1 88 Small nucleolar RNA MBI-161
snoR79 RF00323 Gene; snRNA; guide; CD-box; 4 9 63.1 96 Small nucleolar RNA R79
snoMBII-202 RF00324 Gene; snRNA; guide; CD-box; 5 11 78.0 80 Small nucleolar RNA MBII-202
SNORD53 RF00325 Gene; snRNA; guide; CD-box; 3 8 76.2 82 Small nucleolar RNA SNORD53
snoZ155 RF00326 Gene; snRNA; guide; CD-box; 8 14 78.0 81 Small nucleolar RNA Z155
snoZ194 RF00327 Gene; snRNA; guide; CD-box; 3 7 106.3 99 Small nucleolar RNA Z194
snoZ161_228 RF00328 Gene; snRNA; guide; CD-box; 7 15 92.2 82 Small nucleolar RNA Z161/Z228
snoZ162 RF00329 Gene; snRNA; guide; CD-box; 3 7 88.1 90 Small nucleolar RNA Z162
snoZ43 RF00330 Gene; snRNA; guide; CD-box; 4 13 99.2 82 Small nucleolar RNA Z43
snoZ169 RF00331 Gene; snRNA; guide; CD-box; 3 8 66.8 90 Small nucleolar RNA Z169
snoZ266 RF00332 Gene; snRNA; guide; CD-box; 4 22 87.0 81 Small nucleolar RNA Z266
snoZ157 RF00333 Gene; snRNA; guide; CD-box; 10 26 97.4 73 Small nucleolar RNA Z157/R69/R10
snoMBI-28 RF00334 Gene; snRNA; guide; HACA-box; 3 18 115.6 77 Small nucleolar RNA MBI-28
snoZ13_snr52 RF00335 Gene; snRNA; guide; CD-box; 4 10 95.9 74 Small nucleolar RNA Z13/snr52
snoJ26 RF00336 Gene; snRNA; guide; CD-box; 5 18 146.4 91 Small nucleolar RNA J26
snoZ112 RF00337 Gene; snRNA; guide; CD-box; 3 29 182.7 92 Small nucleolar RNA Z112
snoR53 RF00338 Gene; snRNA; guide; CD-box; 3 3 89.7 94 Small nucleolar RNA snR53
snoR60 RF00339 Gene; snRNA; guide; CD-box; 3 26 73.8 84 Small nucleolar RNA snoR60
snoMBI-87 RF00340 Gene; snRNA; guide; HACA-box; 6 25 131.4 79 Small nucleolar RNA snoMBI-87
snoZ39 RF00341 Gene; snRNA; guide; CD-box; 5 8 61.6 88 Small nucleolar RNA Z39
snoZ40 RF00342 Gene; snRNA; guide; CD-box; 5 11 73.0 89 Small nucleolar RNA Z40
snoZ122 RF00343 Gene; snRNA; guide; CD-box; 3 16 84.9 75 Small nucleolar RNA Z122
snoZ267 RF00344 Gene; snRNA; guide; CD-box; 5 12 73.1 78 Small nucleolar RNA Z267
snoR1 RF00345 Gene; snRNA; guide; CD-box; 7 20 95.1 80 Small nucleolar RNA snoR1
snoZ50 RF00347 Gene; snRNA; guide; CD-box; 3 4 65.8 93 Small nucleolar RNA Z50
snoR9_plant RF00348 Gene; snRNA; guide; CD-box; 7 32 126.0 76 Small nucleolar RNA snoR9
snoR11 RF00349 Gene; snRNA; guide; CD-box; 5 19 91.9 84 Small nucleolar RNA R11/Z151
snoZ152 RF00350 Gene; snRNA; guide; CD-box; 4 12 98.8 80 Small nucleolar RNA Z152/R70/R12/
snoR20 RF00351 Gene; snRNA; guide; CD-box; 3 4 91.0 93 Small nucleolar RNA R20
snoR21 RF00352 Gene; snRNA; guide; CD-box; 4 8 82.0 88 Small nucleolar RNA R21
snoR31_Z110_Z27 RF00353 Gene; snRNA; guide; CD-box; 8 35 95.3 87 Small nucleolar RNA snoR31/Z110/Z27
snoR28 RF00355 Gene; snRNA; guide; CD-box; 4 11 74.0 94 Small nucleolar RNA snoR28
snoR32_R81 RF00356 Gene; snRNA; guide; CD-box; 6 8 95.6 84 Small nucleolar RNA R32/R81/Z41
snoR44_J54 RF00357 Gene; snRNA; guide; CD-box; 19 39 97.6 70 Small nucleolar RNA R44/J54/Z268 family
snoZ101 RF00358 Gene; snRNA; guide; CD-box; 3 18 94.4 71 Small nucleolar RNA Z101
snoZ102_R77 RF00359 Gene; snRNA; guide; CD-box; 4 11 86.5 89 Small nucleolar RNA Z102/R77
snoZ107_R87 RF00360 Gene; snRNA; guide; CD-box; 6 38 112.8 81 Small nucleolar RNA Z107/R87
snoZ119 RF00361 Gene; snRNA; guide; CD-box; 3 12 97.2 94 Small nucleolar RNA Z119
Pospi_RY RF00362 Cis-reg; 16 175 77.8 89 Pospiviroid RY motif stem loop
mir-BART1 RF00363 Gene; miRNA; 3 4 70.0 93 mir-BART1 microRNA precursor family
mir-BART2 RF00364 Gene; miRNA; 8 14 60.4 93 mir-BART2 microRNA precursor family
mir-BHRF1-1 RF00365 Gene; miRNA; 3 6 66.0 97 mir-BHRF1-1 microRNA precursor family
mir-BHRF1-2 RF00366 Gene; miRNA; 4 9 65.0 90 mir-BHRF1-2 microRNA precursor family
mir-BHRF1-3 RF00367 Gene; miRNA; 3 6 65.0 100 mir-BHRF1-3 microRNA precursor family
sroB RF00368 Gene; sRNA; 4 17 81.6 86 sroB RNA
sroC RF00369 Gene; sRNA; 4 14 162.2 86 sroC RNA
sroD RF00370 Gene; sRNA; 3 17 86.8 96 sroD RNA
sroE RF00371 Gene; sRNA; 3 14 89.7 94 sroE RNA
sroH RF00372 Gene; sRNA; 4 7 160.9 100 sroH RNA
RNaseP_arch RF00373 Gene; ribozyme; 34 97 263.1 64 Archaeal RNase P
Gammaretro_CES RF00374 Cis-reg; 23 141 101.0 93 Gammaretrovirus core encapsidation signal
HIV_PBS RF00375 Cis-reg; 388 1609 94.8 79 HIV primer binding site (PBS)
HIV_GSL3 RF00376 Cis-reg; 1403 6923 81.1 87 HIV gag stem loop 3 (GSL3)
snoU6-53 RF00377 Gene; snRNA; guide; CD-box; 4 8 106.9 83 Small nucleolar RNA U6-53/MBII-28
Qrr RF00378 Gene; sRNA; 6 25 103.0 79 Qrr RNA
ydaO-yuaA RF00379 Cis-reg; 25 80 155.4 55 ydaO/yuaA leader
ykoK RF00380 Cis-reg; 36 57 168.1 61 ykoK leader
Antizyme_FSE RF00381 Cis-reg; frameshift_element; 13 53 57.6 87 Antizyme RNA frameshifting stimulation element
DnaX RF00382 Cis-reg; frameshift_element; 3 20 65.0 85 DnaX ribosomal frameshifting element
IS1222_FSE RF00383 Cis-reg; frameshift_element; 6 13 117.8 95 Insertion sequence IS1222 ribosomal frameshifting element
Pox_AX_element RF00384 Cis-reg; 7 22 62.0 96 Poxvirus AX element late mRNA cis-regulatory element
IBV_D-RNA RF00385 Cis-reg; 10 41 41.8 96 Infectious bronchitis virus D-RNA
Entero_5_CRE RF00386 Cis-reg; 160 287 88.1 84 Enterovirus 5' cloverleaf cis-acting replication element
IRES_FGF1 RF00387 Cis-reg; IRES; 6 10 166.9 84 FGF-1 internal ribosome entry site (IRES)
QaRNA RF00388 Gene; antisense; 5 7 103.7 73 Qa RNA
satBaMV_CRE RF00389 Cis-reg; 42 74 157.6 94 Bamboo mosaic virus satellite RNA cis-regulatory element
UPSK RF00390 Cis-reg; 4 25 23.0 97 UPSK RNA
RtT RF00391 Cis-reg; 16 91 169.4 67 RtT RNA
SNORA5 RF00392 Gene; snRNA; guide; HACA-box; 6 12 131.1 74 Small nucleolar RNA SNORA5
SNORA8 RF00393 Gene; snRNA; guide; HACA-box; 5 14 135.1 85 Small nucleolar RNA SNORA8
SNORA4 RF00394 Gene; snRNA; guide; HACA-box; 7 13 138.9 76 Small nucleolar RNA SNORA4
SNORA13 RF00396 Gene; snRNA; guide; HACA-box; 3 8 132.5 87 Small nucleolar RNA SNORA13
SNORA14 RF00397 Gene; snRNA; guide; HACA-box; 3 6 134.7 92 Small nucleolar RNA SNORA14
SNORA15 RF00398 Gene; snRNA; guide; HACA-box; 4 9 128.2 84 Small nucleolar RNA SNORA15
SNORA24 RF00399 Gene; snRNA; guide; HACA-box; 5 17 125.5 74 Small nucleolar RNA SNORA24
SNORA28 RF00400 Gene; snRNA; guide; HACA-box; 3 3 124.7 95 Small nucleolar RNA SNORA28
SNORA20 RF00401 Gene; snRNA; guide; HACA-box; 17 34 128.7 88 Small nucleolar RNA SNORA20
SNORA25 RF00402 Gene; snRNA; guide; HACA-box; 9 29 128.1 74 Small nucleolar RNA SNORA25
SNORA41 RF00403 Gene; snRNA; guide; HACA-box; 6 8 129.0 88 Small nucleolar RNA SNORA41
SNORA46 RF00404 Gene; snRNA; guide; HACA-box; 3 8 125.4 81 Small nucleolar RNA SNORA46
SNORA44 RF00405 Gene; snRNA; guide; HACA-box; 6 17 127.5 81 Small nucleolar RNA SNORA44
SNORA42 RF00406 Gene; snRNA; guide; HACA-box; 4 44 131.1 79 Small nucleolar RNA SNORA42
SNORA50 RF00407 Gene; snRNA; guide; HACA-box; 3 4 135.5 98 Small nucleolar RNA SNORA50
SNORA1 RF00408 Gene; snRNA; guide; HACA-box; 6 11 132.8 87 Small nucleolar RNA SNORA1
SNORA7 RF00409 Gene; snRNA; guide; HACA-box; 8 45 137.8 69 Small nucleolar RNA SNORA7
SNORA2 RF00410 Gene; snRNA; guide; HACA-box; 18 27 134.0 72 Small nucleolar RNA SNORA2
SNORA9 RF00411 Gene; snRNA; guide; HACA-box; 6 14 130.4 87 Small nucleolar RNA SNORA9
SNORA21 RF00412 Gene; snRNA; guide; HACA-box; 5 13 133.5 86 Small nucleolar RNA SNORA21
SNORA19 RF00413 Gene; snRNA; guide; HACA-box; 4 9 121.3 91 Small nucleolar RNA SNORA19
SNORA22 RF00414 Gene; snRNA; guide; HACA-box; 5 6 135.0 91 Small nucleolar RNA SNORA22
SNORA30 RF00415 Gene; snRNA; guide; HACA-box; 11 14 129.1 70 Small nucleolar RNA SNORA30
SNORA43 RF00416 Gene; snRNA; guide; HACA-box; 7 20 135.1 71 Small nucleolar RNA SNORA43
SNORA56 RF00417 Gene; snRNA; guide; HACA-box; 4 7 129.9 97 Small nucleolar RNA SNORA56
SNORA58 RF00418 Gene; snRNA; guide; HACA-box; 4 7 134.9 85 Small nucleolar RNA SNORA58
SNORA52 RF00419 Gene; snRNA; guide; HACA-box; 4 9 135.1 74 Small nucleolar RNA SNORA52
SNORA61 RF00420 Gene; snRNA; guide; HACA-box; 4 15 128.7 77 Small nucleolar RNA SNORA61
SNORA32 RF00421 Gene; snRNA; guide; HACA-box; 9 33 116.7 78 Small nucleolar RNA SNORA32
SCARNA24 RF00422 Gene; snRNA; guide; scaRNA; 3 7 133.1 84 Small Cajal body specific RNA 24
SCARNA4 RF00423 Gene; snRNA; guide; scaRNA; 3 12 127.2 88 Small Cajal body specific RNA 4
SCARNA16 RF00424 Gene; snRNA; guide; scaRNA; 6 9 182.8 80 Small Cajal body specific RNA 16
SNORA18 RF00425 Gene; snRNA; guide; HACA-box; 6 19 126.4 79 Small nucleolar RNA SNORA18
SCARNA15 RF00426 Gene; snRNA; guide; scaRNA; 3 8 124.2 96 Small Cajal body specific RNA 15
SCARNA23 RF00427 Gene; snRNA; guide; scaRNA; 3 4 126.0 92 Small Cajal body specific RNA 23
SNORA38 RF00428 Gene; snRNA; guide; HACA-box; 5 26 132.2 84 Small nucleolar RNA SNORA38
SNORA29 RF00429 Gene; snRNA; guide; HACA-box; 3 10 137.3 82 Small nucleolar RNA SNORA29
SNORA54 RF00430 Gene; snRNA; guide; HACA-box; 5 10 126.0 72 Small nucleolar RNA SNORA54
SNORA55 RF00431 Gene; snRNA; guide; HACA-box; 3 14 126.6 84 Small nucleolar RNA SNORA55
SNORA51 RF00432 Gene; snRNA; guide; HACA-box; 9 35 131.7 74 Small nucleolar RNA SNORA51
Hsp90_CRE RF00433 Cis-reg; thermoregulator; 4 7 152.0 98 Hsp90 cis-regulatory element
BTE RF00434 Cis-reg; 17 32 101.2 73 Luteovirus cap-independent translation element (BTE)
ROSE RF00435 Cis-reg; thermoregulator; 13 20 94.3 65 Repression of heat shock gene expression (ROSE) element
UnaL2 RF00436 Cis-reg; 30 5255 54.0 78 UnaL2 LINE 3' element
HLE RF00437 Cis-reg; 4 20 130.5 89 Hairy RNA localisation element (HLE)
SNORA33 RF00438 Gene; snRNA; guide; HACA-box; 5 11 125.8 77 Small nucleolar RNA SNORA33
SNORD87 RF00439 Gene; snRNA; guide; CD-box; 4 7 81.9 93 Small nucleolar RNA SNORD87
SNORD37 RF00440 Gene; snRNA; guide; CD-box; 7 11 64.5 78 Small nucleolar RNA SNORD37
snoZ242 RF00441 Gene; snRNA; guide; CD-box; 4 11 191.1 82 Small nucleolar RNA Z242
ykkC-yxkD RF00442 Cis-reg; 11 35 106.5 62 ykkC-yxkD leader
SNORA27 RF00443 Gene; snRNA; guide; HACA-box; 3 11 127.9 87 Small nucleolar RNA SNORA27
PrrF RF00444 Gene; sRNA; 5 14 148.4 84 PrrF RNA
mir-399 RF00445 Gene; miRNA; 13 41 113.7 57 mir-399 microRNA precursor family
mir-133 RF00446 Gene; miRNA; 9 27 88.9 82 mir-133 microRNA precursor family
IRES_Kv1_4 RF00447 Cis-reg; IRES; 6 9 255.8 90 Voltage-gated potassium-channel Kv1.4 IRES
IRES_EBNA RF00448 Cis-reg; IRES; 9 14 214.9 66 Epstein-Barr virus nuclear antigen (EBNA) IRES
IRES_HIF1 RF00449 Cis-reg; IRES; 7 12 270.8 84 HIF-1 alpha IRES
snoR105_108 RF00450 Gene; snRNA; guide; CD-box; 7 7 103.3 77 Small nucleolar RNA R105/R108
mir-395 RF00451 Gene; miRNA; 21 107 99.7 64 mir-395 microRNA precursor family
mir-172 RF00452 Gene; miRNA; 8 19 113.5 65 mir-172 microRNA precursor family
Cardiovirus_CRE RF00453 Cis-reg; 12 30 33.0 85 Cardiovirus cis-acting replication element (CRE)
p27_CRE RF00454 Cis-reg; 4 9 58.3 92 p27 cis-regulatory element
mir-15 RF00455 Gene; miRNA; 4 29 85.4 80 mir-15 microRNA precursor family
mir-34 RF00456 Gene; miRNA; 18 20 87.2 70 mir-34 microRNA precursor family
IRES_mnt RF00457 Cis-reg; IRES; 4 7 203.1 97 Mnt IRES
IRES_Cripavirus RF00458 Cis-reg; IRES; 7 8 198.8 56 Cripavirus internal ribosome entry site (IRES)
MPMV_package RF00459 Cis-reg; 4 14 274.5 80 Mason-Pfizer monkey virus packaging signal
U1A_PIE RF00460 Cis-reg; 8 27 74.0 80 U1A polyadenylation inhibition element (PIE)
IRES_VEGF_A RF00461 Cis-reg; IRES; 7 13 305.5 92 Vascular endothelial growth factor (VEGF) IRES A
IRES_APC RF00462 Cis-reg; IRES; 6 8 53.0 85 APC internal ribosome entry site (IRES)
ApoB_5_CRE RF00463 Cis-reg; 3 12 118.9 94 Apolipoprotein B (apoB) 5' UTR cis-regulatory element
mir-92 RF00464 Gene; miRNA; 33 45 79.2 62 mir-92 microRNA precursor family
JEV_hairpin RF00465 Cis-reg; 20 213 59.5 84 Japanese encephalitis virus (JEV) hairpin structure
RSV_PBS RF00467 Cis-reg; 23 101 72.6 83 Rous sarcoma virus (RSV) primer binding site (PBS)
HCV_SLVII RF00468 Cis-reg; 110 497 65.0 78 Hepatitis C virus stem-loop VII
HCV_SLIV RF00469 Cis-reg; 110 344 37.0 89 Hepatitis C stem-loop IV
Toga_5_CRE RF00470 Cis-reg; 33 78 255.3 72 Togavirus 5' plus strand cis-regulatory element
snosnR48 RF00471 Gene; snRNA; guide; CD-box; 6 8 109.4 78 Small nucleolar RNA snR48
snosnR55 RF00472 Gene; snRNA; guide; CD-box; 6 9 88.4 74 Small nucleolar RNA snR55/Z10
snosnR54 RF00473 Gene; snRNA; guide; CD-box; 9 16 81.8 76 Small nucleolar RNA snR54
snosnR57 RF00474 Gene; snRNA; guide; CD-box; 6 8 91.6 75 Small nucleolar RNA snR57
snosnR69 RF00475 Gene; snRNA; guide; CD-box; 7 14 95.6 61 Small nucleolar RNA snR69
snosnR61 RF00476 Gene; snRNA; guide; CD-box; 17 20 82.3 69 Small nucleolar RNA snR61/Z1/Z11
snosnR66 RF00477 Gene; snRNA; guide; CD-box; 5 9 100.7 82 Small nucleolar RNA snR66
SCARNA6 RF00478 Gene; snRNA; guide; scaRNA; 4 9 265.7 63 Small Cajal body specific RNA 6
snosnR71 RF00479 Gene; snRNA; guide; CD-box; 7 7 92.4 73 Small nucleolar RNA snR71
HIV_FE RF00480 Cis-reg; frameshift_element; 853 4437 51.9 90 HIV Ribosomal frameshift signal
HCV_X3 RF00481 Cis-reg; 22 77 100.0 97 Hepatitis C virus 3'X element
snoF1_F2 RF00482 Gene; snRNA; guide; HACA-box; 8 19 136.3 85 Small nucleolar RNA F1/F2/snoR5a
IRES_IGF2 RF00483 Cis-reg; IRES; 9 36 118.4 95 Insulin-like growth factor II IRES
IRES_Cx32 RF00484 Cis-reg; IRES; 6 11 147.5 93 Connexin-32 internal ribosome entry site (IRES)
K_chan_RES RF00485 Cis-reg; 85 364 113.7 65 Potassium channel RNA editing signal
mir-129 RF00486 Gene; miRNA; 6 10 91.1 82 mir-129 microRNA precursor family
IRES_Cx43 RF00487 Cis-reg; IRES; 14 30 195.6 79 Connexin-43 internal ribosome entry site (IRES)
U1_yeast RF00488 Gene; snRNA; splicing; 5 9 553.2 61 Yeast U1 spliceosomal RNA
ctRNA_p42d RF00489 Gene; antisense; 14 33 76.6 67 ctRNA
S-element RF00490 Cis-reg; 12 24 68.0 77 S-element
SVLPA RF00491 Cis-reg; 6 38 54.4 99 Simian virus 40 late polyadenylation signal (SVLPA)
SCARNA17 RF00492 Gene; snRNA; guide; scaRNA; 6 16 141.8 81 small Cajal body-specific RNA 17
snoU2-30 RF00493 Gene; snRNA; guide; CD-box; 3 7 69.3 86 Small nucleolar RNA U2-30
snoU2_19 RF00494 Gene; snRNA; guide; CD-box; 4 7 78.9 87 Small nucleolar RNA U2-19
IRES_Hsp70 RF00495 Cis-reg; IRES; 14 38 209.7 81 Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES)
Corona_SL-III RF00496 Cis-reg; 5 13 42.0 96 Coronavirus SL-III cis-acting replication element (CRE)
EAV_LTH RF00498 Cis-reg; 4 12 45.0 99 Equine arteritis virus leader TRS hairpin (LTH)
Parecho_CRE RF00499 Cis-reg; 5 6 112.8 86 Human parechovirus 1 (HPeV1) cis regulatory element (CRE)
TCV_H5 RF00500 Cis-reg; 3 5 45.2 97 Turnip crinkle virus (TCV) repressor of minus strand synthesis H5
Rota_CRE RF00501 Cis-reg; 14 17 67.8 86 Rotavirus cis-acting replication element (CRE)
TCV_Pr RF00502 Cis-reg; 4 5 52.2 95 Turnip crinkle virus (TCV) core promoter hairpin (Pr)
RNAIII RF00503 Gene; 12 16 506.6 86 RNAIII
Glycine RF00504 Cis-reg; riboswitch; 93 217 102.4 50 Glycine riboswitch
RydC RF00505 Gene; sRNA; 2 12 64.7 91 RydC RNA
Thr_leader RF00506 Cis-reg; 24 33 124.1 81 Threonine operon leader
Corona_FSE RF00507 Cis-reg; frameshift_element; 23 183 82.5 80 Coronavirus frameshifting stimulation element
snosnR64 RF00509 Gene; snRNA; guide; CD-box; 3 9 102.8 89 Small nucleolar RNA snR64
Tombus_IRE RF00510 Cis-reg; 22 41 88.7 85 Tombusvirus internal replication element (IRE)
IRES_KSHV RF00511 Cis-reg; IRES; 4 5 248.0 99 Kaposi's sarcoma-associated herpesvirus internal ribosome entry site (IRES)
Leu_leader RF00512 Cis-reg; leader; 3 25 149.0 81 Leucine operon leader
Trp_leader RF00513 Cis-reg; leader; 11 30 96.6 74 Tryptophan operon leader
His_leader RF00514 Cis-reg; leader; 12 36 126.9 79 Histidine operon leader
PyrR RF00515 Cis-reg; 72 109 114.9 48 PyrR binding site
ylbH RF00516 Cis-reg; 5 16 121.7 75 ylbH leader
serC RF00517 Cis-reg; 6 10 52.4 76 serC leader
speF RF00518 Cis-reg; 6 11 326.2 69 speF leader
suhB RF00519 Gene; sRNA; 13 31 74.9 51 suhB
ybhL RF00520 Cis-reg; 2 7 74.4 75 ybhL leader
SAM_alpha RF00521 Cis-reg; riboswitch; 12 32 76.8 59 SAM riboswitch (alpha-proteobacteria)
PreQ1 RF00522 Cis-reg; riboswitch; 22 63 45.9 61 PreQ1 riboswitch
Prion_pknot RF00523 Cis-reg; 167 1598 40.8 86 Prion pseudoknot
R2_retro_el RF00524 Cis-reg; 15 15 217.1 69 R2 RNA element
Flavivirus_DB RF00525 Cis-reg; 111 889 71.5 70 Flavivirus DB element
snoMe28S-U3344 RF00526 Gene; snRNA; guide; CD-box; 3 6 81.3 88 Small nucleolar RNA Me28S-U3344
snoMe28S-G3255 RF00527 Gene; snRNA; guide; CD-box; 4 14 83.5 86 Small nucleolar RNA Me28S-Gm3255
snoMe28S-Gm1083 RF00528 Gene; snRNA; guide; CD-box; 4 30 87.5 91 Small nucleolar RNA Me28S-Gm1083
snoMe28S-Am2589 RF00529 Gene; snRNA; guide; CD-box; 3 9 108.0 74 Small nucleolar RNA Me28S-Am2589
snoMe28S-Cm2645 RF00530 Gene; snRNA; guide; CD-box; 6 19 75.0 92 Small nucleolar RNA Me28S-Cm2645
snoMe28S-Gm3113 RF00531 Gene; snRNA; guide; CD-box; 3 6 83.2 84 Small nucleolar RNA Me28S-Gm3113
snoMe18S-Um1356 RF00532 Gene; snRNA; guide; CD-box; 3 15 84.8 92 Small nucleolar RNA Me18S-Um1356
snoMe18S-Gm1358 RF00533 Gene; snRNA; guide; CD-box; 3 6 77.2 97 Small nucleolar RNA Me18S-Gm1358
SgrS RF00534 Gene; sRNA; 7 15 76.0 88 SgrS RNA
snoMe28S-Am982 RF00535 Gene; snRNA; guide; CD-box; 4 14 79.3 86 Small nucleolar RNA Me28S-Am982
snoMe28S-Cm3227 RF00536 Gene; snRNA; guide; CD-box; 4 12 81.7 94 Small nucleolar RNA Me28S-Cm3227
snoMe28S-Am2634 RF00537 Gene; snRNA; guide; CD-box; 9 24 90.2 83 Small nucleolar RNA Me28S-Am2634
snoCD11 RF00538 Gene; snRNA; guide; CD-box; 6 9 70.7 91 Small nucleolar RNA CD11
snoMe28S-Cm788 RF00539 Gene; snRNA; guide; CD-box; 3 6 72.5 93 Small nucleolar RNA Me28S-Cm788
snopsi18S-1854 RF00540 Gene; snRNA; guide; HACA-box; 6 15 150.6 87 Small nucleolar RNA psi18S-1854
snopsi28S-2876 RF00541 Gene; snRNA; guide; HACA-box; 3 6 143.3 93 Small nucleolar RNA psi28S-2876
snopsi28S-1192 RF00542 Gene; snRNA; guide; HACA-box; 5 19 138.6 87 Small nucleolar RNA psi28S-1192
snopsi18S-1377 RF00543 Gene; snRNA; guide; HACA-box; 5 16 132.8 78 Small nucleolar RNA psi18S-1377
snopsi28S-3327 RF00544 Gene; snRNA; guide; HACA-box; 3 10 142.4 81 Small nucleolar RNA psi28S-3327
snopsi18S-841 RF00545 Gene; snRNA; guide; HACA-box; 3 7 139.7 76 Small nucleolar RNA psi18S-841/snoR66
snopsi28S-3316 RF00546 Gene; snRNA; guide; HACA-box; 3 15 149.2 74 Small nucleolar RNA psi28S-3316
IRES_TrkB RF00547 Cis-reg; IRES; 4 9 352.6 98 TrkB IRES
U11 RF00548 Gene; snRNA; splicing; 9 29 137.8 59 U11 spliceosomal RNA
IRES_c-sis RF00549 Cis-reg; IRES; 10 14 601.9 89 c-sis internal ribosome entry site (IRES)
HepE_CRE RF00550 Cis-reg; 46 82 146.7 84 Hepatitis E virus cis-reactive element
bicoid_3 RF00551 Cis-reg; 15 44 550.6 87 Bicoid 3'-UTR regulatory element
rncO RF00552 Cis-reg; 6 24 204.1 80 rncO
SCARNA1 RF00553 Gene; snRNA; guide; scaRNA; 3 3 165.7 92 Small Cajal body specific RNA 1
SNORA48 RF00554 Gene; snRNA; guide; HACA-box; 8 34 130.9 79 Small nucleolar RNA SNORA48
L13_leader RF00555 Cis-reg; 19 46 66.4 64 Ribosomal protein L13 leader
L19_leader RF00556 Cis-reg; 24 45 40.7 53 Ribosomal protein L19 leader
L10_leader RF00557 Cis-reg; 66 66 141.3 48 Ribosomal protein L10 leader
L20_leader RF00558 Cis-reg; 59 59 126.7 55 Ribosomal protein L20 leader
L21_leader RF00559 Cis-reg; 33 43 77.1 56 Ribosomal protein L21 leader
SNORA17 RF00560 Gene; snRNA; guide; HACA-box; 38 155 131.5 79 Small nucleolar RNA SNORA17
SNORA40 RF00561 Gene; snRNA; guide; HACA-box; 7 23 126.2 80 Small nucleolar RNA SNORA40
SNORA49 RF00562 Gene; snRNA; guide; HACA-box; 3 3 134.7 92 Small nucleolar RNA SNORA49
SNORA53 RF00563 Gene; snRNA; guide; HACA-box; 4 5 246.0 90 Small nucleolar RNA SNORA53
SCARNA11 RF00564 Gene; snRNA; guide; scaRNA; 4 6 137.3 79 Small Cajal body specific RNA 11
SCARNA25 RF00565 Gene; snRNA; guide; scaRNA; 3 9 134.6 80 Small Cajal body specific RNA 25
SNORA35 RF00566 Gene; snRNA; guide; HACA-box; 3 3 125.0 91 Small nucleolar RNA SNORA35
SNORD17 RF00567 Gene; snRNA; guide; CD-box; 3 3 232.0 90 Small nucleolar RNA SNORD17
SNORA26 RF00568 Gene; snRNA; guide; HACA-box; 12 23 121.2 73 Small nucleolar RNA SNORA26
SNORD19 RF00569 Gene; snRNA; guide; CD-box; 2 4 71.0 71 Small nucleolar RNA SNORD19
SNORD64 RF00570 Gene; snRNA; guide; CD-box; 3 6 63.5 93 Small Nucleolar RNA SNORD64
SNORD65 RF00571 Gene; snRNA; guide; CD-box; 4 6 72.2 82 Small nucleolar RNA SNORD65
SNORD66 RF00572 Gene; snRNA; guide; CD-box; 4 5 72.0 79 Small nucleolar RNA SNORD66
SNORD67 RF00573 Gene; snRNA; guide; CD-box; 2 3 106.7 98 Small nucleolar RNA SNORD67
SNORD69 RF00574 Gene; snRNA; guide; CD-box; 2 3 70.7 91 Small nucleolar RNA SNORD69
SNORD70 RF00575 Gene; snRNA; guide; CD-box; 4 8 80.5 85 Small nucleolar RNA SNORD70
SNORD71 RF00576 Gene; snRNA; guide; HACA-box; 2 3 75.3 90 Small nucleolar RNA SNORD71
SNORD72 RF00577 Gene; snRNA; guide; CD-box; 3 10 77.7 90 Small nucleolar RNA SNORD72
SNORD89 RF00578 Gene; snRNA; guide; CD-box; 2 4 105.5 93 Small nucleolar RNA SNORD89
SNORD90 RF00579 Gene; snRNA; guide; CD-box; 2 3 96.0 92 Small nucleolar RNA SNORD90
snoHBII-296A RF00580 Gene; snRNA; guide; CD-box; 3 6 92.5 82 Small nucleolar RNA 296A/B
SNORD12 RF00581 Gene; snRNA; guide; CD-box; 8 10 86.1 71 Small nucleolar SNORD12/SNORD106
SCARNA14 RF00582 Gene; snRNA; guide; scaRNA; 4 9 129.0 69 Small Cajal body specific RNA 14
SNORD105 RF00584 Gene; snRNA; guide; CD-box; 2 5 83.8 89 Small nucleolar RNA SNORD105
SNORA12 RF00586 Gene; snRNA; guide; HACA-box; 4 6 151.5 84 Small nucleolar RNA SNORA12
SNORD41 RF00588 Gene; snRNA; guide; CD-box; 2 3 69.7 92 Small nucleolar RNA SNORD41
SNORD77 RF00591 Gene; snRNA; guide; CD-box; 5 9 67.3 90 Small nucleolar RNA SNORD77
SNORD78 RF00592 Gene; snRNA; guide; CD-box; 4 11 65.8 90 Small nucleolar RNA SNORD78
snoU83B RF00593 Gene; snRNA; guide; CD-box; 4 9 91.4 87 Small nucleolar RNA U83B
SNORD86 RF00594 Gene; snRNA; guide; CD-box; 6 11 83.5 81 Small nucleolar RNA SNORD86
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