Position weight matrix: Revision history

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curprev 19:4119:41, 18 March 2025 SilkPyjamas talk contribs m 11,926 bytes +87 Adding local short description: "Commonly used representation of patterns in biological sequences", overriding Wikidata description "tabular numerical representations of biological sequence motifs displaying their variability as likelihood values for each possible residue at each position in a sequence" undo Tag: Shortdesc helper

curprev 21:4621:46, 23 September 2024 Synpath talk contribs 11,839 bytes +24 Adding class=skin-invert-image to dark drawings for readability in dark mode per https://www.mediawiki.org/wiki/Recommendations_for_night_mode_compatibility_on_Wikimedia_wikis#Apply_filters_to_dark_images_with_transparent_background undo Tag: 2017 wikitext editor

curprev 21:2921:29, 15 December 2023 Arjayay talk contribs m 11,815 bytes −4 Duplicate word removed undo

curprev 04:5304:53, 14 December 2023 Artoria2e5 talk contribs 11,819 bytes +731 →Uses: hmm undo

curprev 06:5206:52, 3 December 2023 Citation bot talk contribs 11,088 bytes +36 Add: doi-access. | Use this bot. Report bugs. | #UCB_CommandLine undo

curprev 21:3321:33, 2 October 2023 76.132.5.147 talk 11,052 bytes −7 The computations described below are log-odds, not log-likelihood undo

curprev 07:3807:38, 8 November 2022 I dream of horses talk contribs m 11,059 bytes +38 →Background: Autowikibrowser cleanup, added Empty section (1) tag undo Tag: AWB

curprev 18:2618:26, 10 May 2022 JoeNMLC talk contribs 11,021 bytes +26 →See also: add section; add ScerTF undo

curprev 08:3808:38, 18 February 2022 Synthaze talk contribs 10,995 bytes −2,019 →Background: has been finally removed because it is inconsistent with all other content in this article. undo Tag: section blanking
curprev 08:1208:12, 18 February 2022 Synthaze talk contribs 13,014 bytes −631 →Background: The reference https://www.ncbi.nlm.nih.gov/pmc/articles/PMC320670/pdf/nar00378-0235.pdf which attributes PWM introduction to Stormo is not appropriate. There is zero mention of neither "PWM", "position weight matrix", "position W matrix", etc... Moreover, the whole →Background: background section should be deleted because it is not related at all with the →Creation: section below. There is a severe confusion between PWM definition and weight matrix in neural networks. undo Tag: references removed

curprev 05:5605:56, 6 December 2021 Jonesey95 talk contribs 13,645 bytes +45 Fix Linter errors. undo

curprev 23:4423:44, 16 January 2021 Dawnseeker2000 talk contribs m 13,600 bytes −14 date format audit, minor formatting undo Tag: AWB

curprev 13:2313:23, 24 November 2020 81.191.116.205 talk 13,614 bytes −47 Undid revision 990431598 by 81.191.116.205 (talk) undo Tag: Undo
curprev 12:5712:57, 24 November 2020 81.191.116.205 talk 13,661 bytes +47 No edit summary undo Tag: Reverted

curprev 00:1900:19, 18 April 2020 OAbot talk contribs m 13,614 bytes +32 Open access bot: doi added to citation with #oabot. undo

curprev 14:4814:48, 24 March 2020 Malum123 talk contribs 13,582 bytes −14 →Conversion of sequence to position probability matrix undo

curprev 02:0602:06, 13 March 2020 126.164.248.29 talk 13,596 bytes +6 →Conversion of sequence to position probability matrix: using more accurate words undo Tags: Mobile edit Mobile app edit Android app edit

curprev 17:0017:00, 26 December 2019 Rjwilmsi talk contribs m 13,590 bytes +14 →Background: Journal cites:, added 1 PMID undo Tag: AWB

curprev 12:3812:38, 20 August 2019 109.182.114.100 talk 13,576 bytes +13 →Information content undo
curprev 12:3712:37, 20 August 2019 109.182.114.100 talk 13,563 bytes −3 →Information content undo
curprev 12:3712:37, 20 August 2019 109.182.114.100 talk 13,566 bytes 0 →Information content undo

curprev 00:4400:44, 28 November 2018 Citation bot talk contribs m 13,566 bytes −15 Alter: title. Add: pmid, pmc. Removed parameters. You can use this bot yourself. Report bugs here. | User-activated; Category:Bioinformatics. undo

curprev 16:2516:25, 8 June 2018 Jmertel23 talk contribs m 13,581 bytes +4 link UniPROBE using Find link undo

curprev 19:2619:26, 14 March 2018 Kahtar talk contribs m 13,577 bytes −6 Repair CS1 error(s), replaced: work=http:// → work=, typo(s) fixed: Therefore → Therefore, using AWB undo

curprev 11:4211:42, 13 February 2018 8.39.120.143 talk 13,583 bytes −2 →Conversion of position probability matrix to position weight matrix undo Tags: Mobile edit Mobile web edit

curprev 02:4002:40, 17 September 2017 Evolution and evolvability talk contribs m 13,585 bytes −59 →Uses: ce undo Tag: Visual edit
curprev 02:3902:39, 17 September 2017 Evolution and evolvability talk contribs 13,644 bytes +92 Heading formatting undo Tag: Visual edit

curprev 08:5908:59, 10 April 2017 Rjwilmsi talk contribs m 13,552 bytes +40 Journal cites:, added 2 PMIDs, added 1 PMC using AWB (12151) undo

curprev 11:0311:03, 27 September 2016 130.229.49.37 talk 13,512 bytes 0 log_2(1/0.25)=2, and nothing else undo

curprev 16:3016:30, 26 August 2016 Hsp90 talk contribs m 13,512 bytes 0 →Creating the PWM: base 2 not "e" is used for PWM construction (consult any bioinformatic package biopython implementation, or e.g. http://www.ncbi.nlm.nih.gov/Class/Structure/pssm/pssm_viewer.cgi?mode=help&params=Position,COG3871,1,,,1,,,,,,&q=5) undo

curprev 00:5800:58, 12 June 2016 Tom.Reding talk contribs m 13,512 bytes −108 Fix Category:Pages using citations with accessdate and no URL when perm identifier present (doi|bibcode|arxiv|pmid|jstor|isbn|issn|lccn|oclc|ismn|hdl) (rem access-date) using AWB undo

curprev 23:3323:33, 5 May 2016 Sbandya1 talk contribs m 13,620 bytes −1 →Creating the PWM: Changed log10 transformation to natural log based on PWM values undo Tag: Visual edit

curprev 23:0823:08, 30 November 2015 Amkilpatrick talk contribs m 13,621 bytes 0 Undid revision 693150975 by 24.6.95.252 (talk) was correct before (note switch of 'random' and 'functional') undo
curprev 19:2519:25, 30 November 2015 24.6.95.252 talk 13,621 bytes 0 No edit summary undo

curprev 23:0923:09, 16 October 2015 Non-dropframe talk contribs 13,621 bytes −103 Reverted 3 good faith edits by Никский using STiki undo
curprev 23:0123:01, 16 October 2015 Никский talk contribs 13,724 bytes +103 →External links undo
curprev 22:5922:59, 16 October 2015 Никский talk contribs 13,621 bytes −102 →External links undo
curprev 22:5722:57, 16 October 2015 Никский talk contribs 13,723 bytes +102 →External links undo

curprev 00:2800:28, 2 September 2015 Monkbot talk contribs m 13,621 bytes +1 →Using PWMs: Task 7c: repair/replace et al. in cs1 author/editor parameters; undo

curprev 16:0416:04, 2 August 2015 141.20.212.149 talk 13,620 bytes +2 →Creating the PWM undo
curprev 16:0316:03, 2 August 2015 141.20.212.149 talk 13,618 bytes +87 →Creating the PWM: Another difficult passage was improved concerning readability undo
curprev 14:1114:11, 2 August 2015 141.20.212.149 talk 13,531 bytes +19 →From Sequences to PWM: I had to update my previous changes; I considered to formulate a little bit better. undo
curprev 14:0714:07, 2 August 2015 141.20.212.149 talk 13,512 bytes +3 →From Sequences to PWM: a sentence seemed grammatically difficult to understand, therefore I changed it. undo

curprev 14:3114:31, 6 May 2015 Trappist the monk talk contribs m 13,509 bytes −13 →Using PWMs: Remove redundant |year= parameter from CS1 citations; using AWB undo

curprev 19:5919:59, 29 April 2015 RoadTrain talk contribs m 13,522 bytes 0 →Using PWMs: fix year undo

curprev 14:0714:07, 27 April 2015 Unknomics talk contribs m 13,522 bytes 0 →From Sequences to PWM: : Typo undo

curprev 21:3121:31, 10 November 2014 68.181.207.31 talk 13,522 bytes +2 No edit summary undo

curprev 14:0814:08, 24 October 2014 Thorwald talk contribs m 13,520 bytes −25 →From Sequences to PWM: rm "accessdate" in cite_journal, as those are never used in that tpl (those are permalinks) undo

curprev 15:1715:17, 22 October 2014 91.126.129.194 talk 13,545 bytes 0 →Creating the PWM undo

curprev 16:2716:27, 20 August 2014 Harlba talk contribs 13,545 bytes +8 →Using log likelihoods: Clarification of terms. undo

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